miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28775 5' -61.6 NC_006146.1 + 127527 0.66 0.650504
Target:  5'- -aGcCGCUGCUGccccCGCuaaGCCACCCc -3'
miRNA:   3'- uaCuGCGACGACc---GCGug-CGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 120760 0.66 0.630577
Target:  5'- -cGACGagcGCUGGCG-GCGCCucauguCCCUg -3'
miRNA:   3'- uaCUGCga-CGACCGCgUGCGGu-----GGGA- -5'
28775 5' -61.6 NC_006146.1 + 14627 0.66 0.62958
Target:  5'- cUGGCGCUGCgugggggagcucaUGGUGCugcccaaccACGgCACCCc -3'
miRNA:   3'- uACUGCGACG-------------ACCGCG---------UGCgGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 41481 0.67 0.610654
Target:  5'- gGUGAUGUUGCUgggccuuggGGUGCGCGgggacgaCGCCCg -3'
miRNA:   3'- -UACUGCGACGA---------CCGCGUGCg------GUGGGa -5'
28775 5' -61.6 NC_006146.1 + 21255 0.67 0.610654
Target:  5'- --cGCGCUGCcGGCGCGUGCUcgACCUg -3'
miRNA:   3'- uacUGCGACGaCCGCGUGCGG--UGGGa -5'
28775 5' -61.6 NC_006146.1 + 16201 0.67 0.610654
Target:  5'- gGUGG-GCUGCaucugGGCGCAgaCCACCCa -3'
miRNA:   3'- -UACUgCGACGa----CCGCGUgcGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 115553 0.67 0.600712
Target:  5'- gGUGGCggggGCUGgaGGCGaC-CGCgGCCCUa -3'
miRNA:   3'- -UACUG----CGACgaCCGC-GuGCGgUGGGA- -5'
28775 5' -61.6 NC_006146.1 + 25855 0.67 0.600712
Target:  5'- --aGCGCcaggGCUGcGCGCucACGCUGCCCg -3'
miRNA:   3'- uacUGCGa---CGAC-CGCG--UGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 2758 0.67 0.580901
Target:  5'- -aGACGgggGaaGGcCGCGCGCCGCCCc -3'
miRNA:   3'- uaCUGCga-CgaCC-GCGUGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 1826 0.67 0.580901
Target:  5'- -aGACGgggGaaGGcCGCGCGCCGCCCc -3'
miRNA:   3'- uaCUGCga-CgaCC-GCGUGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 894 0.67 0.580901
Target:  5'- -aGACGgggGaaGGcCGCGCGCCGCCCc -3'
miRNA:   3'- uaCUGCga-CgaCC-GCGUGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 11344 0.68 0.551459
Target:  5'- -aGACGCUGUacacgggccUGGCGCagGCGCUGCgCg -3'
miRNA:   3'- uaCUGCGACG---------ACCGCG--UGCGGUGgGa -5'
28775 5' -61.6 NC_006146.1 + 132061 0.68 0.522488
Target:  5'- --cGCGCUGCUGGaCGUGaGCUGCCCc -3'
miRNA:   3'- uacUGCGACGACC-GCGUgCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 71705 0.68 0.522488
Target:  5'- -cGGCcuccCUGgaGGCGgACGCCACCUg -3'
miRNA:   3'- uaCUGc---GACgaCCGCgUGCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 21802 0.68 0.512959
Target:  5'- -gGAUGCcg--GGCGCGCGCC-CCCg -3'
miRNA:   3'- uaCUGCGacgaCCGCGUGCGGuGGGa -5'
28775 5' -61.6 NC_006146.1 + 122850 0.69 0.466481
Target:  5'- -cGcACGCUGCccggGGCGCugGaCgACCCg -3'
miRNA:   3'- uaC-UGCGACGa---CCGCGugC-GgUGGGa -5'
28775 5' -61.6 NC_006146.1 + 102782 0.7 0.413743
Target:  5'- cGUGGCGCcGCUcccgcGGaccgGCugGCCGCCCa -3'
miRNA:   3'- -UACUGCGaCGA-----CCg---CGugCGGUGGGa -5'
28775 5' -61.6 NC_006146.1 + 168112 0.7 0.396995
Target:  5'- -aGGC-CUGCUGGCGCcugGCGUCuuCCCUg -3'
miRNA:   3'- uaCUGcGACGACCGCG---UGCGGu-GGGA- -5'
28775 5' -61.6 NC_006146.1 + 43219 0.73 0.286019
Target:  5'- -gGGCGCUGCUGGUGagaggaGCCcCCCUg -3'
miRNA:   3'- uaCUGCGACGACCGCgug---CGGuGGGA- -5'
28775 5' -61.6 NC_006146.1 + 118955 0.73 0.285368
Target:  5'- -cGGCGCcaGUUGGCGCGCagaccgcaccgggGCCGCCCg -3'
miRNA:   3'- uaCUGCGa-CGACCGCGUG-------------CGGUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.