miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28776 3' -65.9 NC_006146.1 + 136423 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 137073 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 137166 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 135772 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 135865 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 135401 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 136609 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 122989 0.66 0.520396
Target:  5'- uCCUCCagGCCaCGggggacuucuUCUCGGAGCUGCUGa -3'
miRNA:   3'- cGGAGG--CGG-GC----------GGAGCCUCGGCGGCg -5'
28776 3' -65.9 NC_006146.1 + 137259 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 136980 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 136516 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 136051 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 135494 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 135587 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 163199 0.66 0.520396
Target:  5'- gGCUUCUGCCC-CUcagaGGAGCCgggcagGCCGUa -3'
miRNA:   3'- -CGGAGGCGGGcGGag--CCUCGG------CGGCG- -5'
28776 3' -65.9 NC_006146.1 + 135215 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 135308 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 150711 0.66 0.520396
Target:  5'- aGCCUCCugcGCCC-CCg-GGGGCCcuCUGCa -3'
miRNA:   3'- -CGGAGG---CGGGcGGagCCUCGGc-GGCG- -5'
28776 3' -65.9 NC_006146.1 + 136794 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 136887 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.