miRNA display CGI


Results 21 - 32 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28776 5' -56.3 NC_006146.1 + 95055 0.66 0.927219
Target:  5'- -gACaugGGGGCUCCcacucguggUGGcagCUGugGUGGg -3'
miRNA:   3'- aaUGa--CCCUGAGG---------ACCa--GGCugCACC- -5'
28776 5' -56.3 NC_006146.1 + 113978 0.67 0.891612
Target:  5'- gUGCccgGGGGCUCCgcguuguugaaGGagCUGGCGUGGa -3'
miRNA:   3'- aAUGa--CCCUGAGGa----------CCa-GGCUGCACC- -5'
28776 5' -56.3 NC_006146.1 + 121349 0.75 0.43906
Target:  5'- aUGCUGGG---CCUGG-CCGGCGUGGc -3'
miRNA:   3'- aAUGACCCugaGGACCaGGCUGCACC- -5'
28776 5' -56.3 NC_006146.1 + 124215 1.08 0.003578
Target:  5'- cUUACUGGGACUCCUGGUCCGACGUGGa -3'
miRNA:   3'- -AAUGACCCUGAGGACCAGGCUGCACC- -5'
28776 5' -56.3 NC_006146.1 + 141201 0.66 0.910451
Target:  5'- aUACcaGGGGCUCCUGGggggaaCUGGgcaGUGGa -3'
miRNA:   3'- aAUGa-CCCUGAGGACCa-----GGCUg--CACC- -5'
28776 5' -56.3 NC_006146.1 + 144276 0.67 0.877938
Target:  5'- cUACUuuuaGGGGCUCCUGGggggaaCUGGgcaGUGGa -3'
miRNA:   3'- aAUGA----CCCUGAGGACCa-----GGCUg--CACC- -5'
28776 5' -56.3 NC_006146.1 + 147354 0.67 0.877938
Target:  5'- cUACUuuuaGGGGCUCCUGGggggaaCUGGgcaGUGGa -3'
miRNA:   3'- aAUGA----CCCUGAGGACCa-----GGCUg--CACC- -5'
28776 5' -56.3 NC_006146.1 + 150432 0.67 0.877938
Target:  5'- cUACUuuuaGGGGCUCCUGGggggaaCUGGgcaGUGGa -3'
miRNA:   3'- aAUGA----CCCUGAGGACCa-----GGCUg--CACC- -5'
28776 5' -56.3 NC_006146.1 + 153510 0.67 0.877938
Target:  5'- cUACUuuuaGGGGCUCCUGGggggaaCUGGgcaGUGGa -3'
miRNA:   3'- aAUGA----CCCUGAGGACCa-----GGCUg--CACC- -5'
28776 5' -56.3 NC_006146.1 + 156588 0.67 0.877938
Target:  5'- cUACUuuuaGGGGCUCCUGGggggaaCUGGgcaGUGGa -3'
miRNA:   3'- aAUGA----CCCUGAGGACCa-----GGCUg--CACC- -5'
28776 5' -56.3 NC_006146.1 + 165811 0.68 0.823639
Target:  5'- -gGCUaggGGGGCgucCCUGG-CCG-CGUGGa -3'
miRNA:   3'- aaUGA---CCCUGa--GGACCaGGCuGCACC- -5'
28776 5' -56.3 NC_006146.1 + 166825 0.66 0.904399
Target:  5'- gUGCUGucGACgcggCCcgGGUCCG-CGUGGa -3'
miRNA:   3'- aAUGACc-CUGa---GGa-CCAGGCuGCACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.