miRNA display CGI


Results 41 - 60 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 128503 0.67 0.609302
Target:  5'- cGAGGaCggCGUCgGGGuGGCCCuGGGGc -3'
miRNA:   3'- -CUCCgGuaGUAGgUCCuCCGGG-CCCU- -5'
28777 3' -61.4 NC_006146.1 + 152036 0.67 0.608318
Target:  5'- uGAGGCCcccgcaCGUCCAccaccccGGcAGcGCCCGGGGu -3'
miRNA:   3'- -CUCCGGua----GUAGGU-------CC-UC-CGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 56284 0.67 0.599466
Target:  5'- gGAGGCCAggaCGUCCagcgccgccucgAGGuGGCCCaGGc -3'
miRNA:   3'- -CUCCGGUa--GUAGG------------UCCuCCGGGcCCu -5'
28777 3' -61.4 NC_006146.1 + 150583 0.67 0.629017
Target:  5'- -uGGCCAUCGUCCAGcacccGCCUgcagGGGAu -3'
miRNA:   3'- cuCCGGUAGUAGGUCcuc--CGGG----CCCU- -5'
28777 3' -61.4 NC_006146.1 + 43268 0.67 0.64874
Target:  5'- aGAGGCaCAgggCggCCuGGAGGUCCGGc- -3'
miRNA:   3'- -CUCCG-GUa--GuaGGuCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 26296 0.67 0.638881
Target:  5'- aGGGGCCggCAUCU-GGAGGCgUGGa- -3'
miRNA:   3'- -CUCCGGuaGUAGGuCCUCCGgGCCcu -5'
28777 3' -61.4 NC_006146.1 + 123338 0.67 0.619155
Target:  5'- cGGGGCCGUCAggggucucgCCgAGGGagcucuggcgcuGGCCgGGGGc -3'
miRNA:   3'- -CUCCGGUAGUa--------GG-UCCU------------CCGGgCCCU- -5'
28777 3' -61.4 NC_006146.1 + 126296 0.67 0.599466
Target:  5'- -uGGCCAuucuaUCAUgcaaCGGGAaaggcagcGGCCCGGGGg -3'
miRNA:   3'- cuCCGGU-----AGUAg---GUCCU--------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 44556 0.67 0.599466
Target:  5'- aGGGGCCGgggC-UCCGGGuGGCUgGcGGAa -3'
miRNA:   3'- -CUCCGGUa--GuAGGUCCuCCGGgC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 118419 0.67 0.64874
Target:  5'- -cGGCCGUCGUCCAGucccuggccGAGGUCCu--- -3'
miRNA:   3'- cuCCGGUAGUAGGUC---------CUCCGGGcccu -5'
28777 3' -61.4 NC_006146.1 + 146766 0.67 0.629017
Target:  5'- aGAGGCCgaGUCAcgcgaCAGGuacAGGCCCGGu- -3'
miRNA:   3'- -CUCCGG--UAGUag---GUCC---UCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 103580 0.68 0.57401
Target:  5'- cGGGCCuggg-CCGGGcucagcgcggacguGGCCCGGGAg -3'
miRNA:   3'- cUCCGGuaguaGGUCCu-------------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 168341 0.68 0.55074
Target:  5'- cGGGGCCuggCGggggCCAGcgcGGGGuCCCGGGGc -3'
miRNA:   3'- -CUCCGGua-GUa---GGUC---CUCC-GGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 167409 0.68 0.55074
Target:  5'- cGGGGCCuggCGggggCCAGcgcGGGGuCCCGGGGc -3'
miRNA:   3'- -CUCCGGua-GUa---GGUC---CUCC-GGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 146633 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 169273 0.68 0.55074
Target:  5'- cGGGGCCuggCGggggCCAGcgcGGGGuCCCGGGGc -3'
miRNA:   3'- -CUCCGGua-GUa---GGUC---CUCC-GGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 143555 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 149710 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 152788 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 22104 0.68 0.570114
Target:  5'- cGGGuGUCAUCAU-CGGGAaaGGCaCCGGGGa -3'
miRNA:   3'- -CUC-CGGUAGUAgGUCCU--CCG-GGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.