miRNA display CGI


Results 61 - 80 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 143555 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 149710 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 152788 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 22104 0.68 0.570114
Target:  5'- cGGGuGUCAUCAU-CGGGAaaGGCaCCGGGGa -3'
miRNA:   3'- -CUC-CGGUAGUAgGUCCU--CCG-GGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 73032 0.68 0.570114
Target:  5'- cAGGCCcUCGuUCCAc--GGCCCGGGGu -3'
miRNA:   3'- cUCCGGuAGU-AGGUccuCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 103580 0.68 0.57401
Target:  5'- cGGGCCuggg-CCGGGcucagcgcggacguGGCCCGGGAg -3'
miRNA:   3'- cUCCGGuaguaGGUCCu-------------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 14809 0.68 0.576936
Target:  5'- aGAGGCCGgccgggCCGGaGgagggcacggucucGGGCCCGGGGc -3'
miRNA:   3'- -CUCCGGUagua--GGUC-C--------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 28079 0.68 0.579865
Target:  5'- uGGGCUucggggCAUUCuuGAGGCCCGGGu -3'
miRNA:   3'- cUCCGGua----GUAGGucCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 88339 0.68 0.579865
Target:  5'- gGAGGCCGUUGggcCCAGGGGGUUaaaGGAg -3'
miRNA:   3'- -CUCCGGUAGUa--GGUCCUCCGGgc-CCU- -5'
28777 3' -61.4 NC_006146.1 + 146633 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 63818 0.68 0.589651
Target:  5'- -uGGCCAcgacUAUCCAGGucuugccguGGCgCCGGGGa -3'
miRNA:   3'- cuCCGGUa---GUAGGUCCu--------CCG-GGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 158425 0.68 0.55074
Target:  5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3'
miRNA:   3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 155866 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 115445 0.68 0.541127
Target:  5'- -cGGCCAUCGagCGGGuGGCCaCGGu- -3'
miRNA:   3'- cuCCGGUAGUagGUCCuCCGG-GCCcu -5'
28777 3' -61.4 NC_006146.1 + 143034 0.68 0.55074
Target:  5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3'
miRNA:   3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 146112 0.68 0.55074
Target:  5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3'
miRNA:   3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 149190 0.68 0.55074
Target:  5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3'
miRNA:   3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 152268 0.68 0.55074
Target:  5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3'
miRNA:   3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 155346 0.68 0.55074
Target:  5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3'
miRNA:   3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 41064 0.68 0.589651
Target:  5'- gGGGGCC-UCGggguggaGGGAGGCCaGGGAc -3'
miRNA:   3'- -CUCCGGuAGUagg----UCCUCCGGgCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.