miRNA display CGI


Results 81 - 100 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 125358 0.69 0.484809
Target:  5'- gGAGGCCAgggCGgccaagCCcaAGGAGGCCCaGGc -3'
miRNA:   3'- -CUCCGGUa--GUa-----GG--UCCUCCGGGcCCu -5'
28777 3' -61.4 NC_006146.1 + 61511 0.69 0.494011
Target:  5'- -cGGCCGUCcgAUCaGGGAGGCCUccgguguccggGGGAc -3'
miRNA:   3'- cuCCGGUAG--UAGgUCCUCCGGG-----------CCCU- -5'
28777 3' -61.4 NC_006146.1 + 145136 0.69 0.522078
Target:  5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3'
miRNA:   3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 1443 0.69 0.503293
Target:  5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3'
miRNA:   3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 2375 0.69 0.503293
Target:  5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3'
miRNA:   3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 3307 0.69 0.503293
Target:  5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3'
miRNA:   3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 32933 0.69 0.51265
Target:  5'- -cGGCCc----CCGGGAGGCCCGGc- -3'
miRNA:   3'- cuCCGGuaguaGGUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 142058 0.69 0.522078
Target:  5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3'
miRNA:   3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 113588 0.69 0.483893
Target:  5'- aGAGaGCCAcgCGUCCAGGuccacaaAGGCCUccuGGGGg -3'
miRNA:   3'- -CUC-CGGUa-GUAGGUCC-------UCCGGG---CCCU- -5'
28777 3' -61.4 NC_006146.1 + 157448 0.69 0.522078
Target:  5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3'
miRNA:   3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 124684 0.69 0.531572
Target:  5'- -cGGCUucauuuUCcUCCAGGAaGCCUGGGAg -3'
miRNA:   3'- cuCCGGu-----AGuAGGUCCUcCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 137039 0.69 0.531572
Target:  5'- gGAGGCCGggu----GGGGGCCUGGGGu -3'
miRNA:   3'- -CUCCGGUaguagguCCUCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 49048 0.69 0.492164
Target:  5'- cGAGaCCGUCGcgucguagacagCCAGGAGaCCCGGGAg -3'
miRNA:   3'- -CUCcGGUAGUa-----------GGUCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 154370 0.69 0.522078
Target:  5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3'
miRNA:   3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 151292 0.69 0.522078
Target:  5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3'
miRNA:   3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 41848 0.69 0.484809
Target:  5'- cGGGCCGUgG-CCAGG-GGCuaCCGGGGc -3'
miRNA:   3'- cUCCGGUAgUaGGUCCuCCG--GGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 148214 0.69 0.522078
Target:  5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3'
miRNA:   3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 512 0.69 0.503293
Target:  5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3'
miRNA:   3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 38957 0.69 0.497715
Target:  5'- -uGGCCuuggCAUCCGGGuGGGCCCccagacucucgcagaGGGGg -3'
miRNA:   3'- cuCCGGua--GUAGGUCC-UCCGGG---------------CCCU- -5'
28777 3' -61.4 NC_006146.1 + 123146 0.7 0.45771
Target:  5'- gGAGGCCGUacucgCCagggcgcgcgAGGAGGCCCcGGAc -3'
miRNA:   3'- -CUCCGGUAgua--GG----------UCCUCCGGGcCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.