Results 101 - 120 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28777 | 3' | -61.4 | NC_006146.1 | + | 67313 | 0.7 | 0.475689 |
Target: 5'- cGGGCCA-CGUCCGcgcugagcccGGcccAGGCCCGGGc -3' miRNA: 3'- cUCCGGUaGUAGGU----------CC---UCCGGGCCCu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 19965 | 0.7 | 0.431444 |
Target: 5'- aGGGCCGggggCGUCugcgagguCAGGAGGCCCcacgacgccGGGAa -3' miRNA: 3'- cUCCGGUa---GUAG--------GUCCUCCGGG---------CCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 136760 | 0.7 | 0.440102 |
Target: 5'- --cGCCGgggC-UCCGGGAGGCCCGGc- -3' miRNA: 3'- cucCGGUa--GuAGGUCCUCCGGGCCcu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 53315 | 0.7 | 0.439232 |
Target: 5'- -uGGCCGgaGUCCgagcccgAGGAGGCCCGGcGGc -3' miRNA: 3'- cuCCGGUagUAGG-------UCCUCCGGGCC-CU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 123146 | 0.7 | 0.45771 |
Target: 5'- gGAGGCCGUacucgCCagggcgcgcgAGGAGGCCCcGGAc -3' miRNA: 3'- -CUCCGGUAgua--GG----------UCCUCCGGGcCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 110722 | 0.7 | 0.439232 |
Target: 5'- cGAGGCCAacuUUAUCaagaAGGAGGCCCugccggcuauccuGGGc -3' miRNA: 3'- -CUCCGGU---AGUAGg---UCCUCCGGG-------------CCCu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 51572 | 0.71 | 0.414431 |
Target: 5'- uGGGCg--CcgCCGGGAggGGCCCGGGGg -3' miRNA: 3'- cUCCGguaGuaGGUCCU--CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 76732 | 0.71 | 0.37376 |
Target: 5'- cGAGGCCGaCAgcuUCguGGAGGCCCacGGGc -3' miRNA: 3'- -CUCCGGUaGU---AGguCCUCCGGG--CCCu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 96441 | 0.71 | 0.381675 |
Target: 5'- aAGGCCAUCGUgggCCAuGGGGGCa-GGGAc -3' miRNA: 3'- cUCCGGUAGUA---GGU-CCUCCGggCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 55244 | 0.71 | 0.389701 |
Target: 5'- cAGGUaCGUCGcCCGGGcGGCCCGGGc -3' miRNA: 3'- cUCCG-GUAGUaGGUCCuCCGGGCCCu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 167245 | 0.71 | 0.397018 |
Target: 5'- -cGGCCAgUCccuggauGUCgGGGAgGGCCCGGGGc -3' miRNA: 3'- cuCCGGU-AG-------UAGgUCCU-CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 168177 | 0.71 | 0.397018 |
Target: 5'- -cGGCCAgUCccuggauGUCgGGGAgGGCCCGGGGc -3' miRNA: 3'- cuCCGGU-AG-------UAGgUCCU-CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 169109 | 0.71 | 0.397018 |
Target: 5'- -cGGCCAgUCccuggauGUCgGGGAgGGCCCGGGGc -3' miRNA: 3'- cuCCGGU-AG-------UAGgUCCU-CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 170041 | 0.71 | 0.397018 |
Target: 5'- -cGGCCAgUCccuggauGUCgGGGAgGGCCCGGGGc -3' miRNA: 3'- cuCCGGU-AG-------UAGgUCCU-CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 44945 | 0.71 | 0.397837 |
Target: 5'- -uGGCCAggggCG-CgGGGAGGcCCCGGGGg -3' miRNA: 3'- cuCCGGUa---GUaGgUCCUCC-GGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 7914 | 0.71 | 0.389701 |
Target: 5'- gGAGGCCGagGagaAGGGGGaCCCGGGAa -3' miRNA: 3'- -CUCCGGUagUaggUCCUCC-GGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 129001 | 0.71 | 0.422886 |
Target: 5'- --uGCCGUCcgCCAGGcagacgcgacucAGGUCCGGGGc -3' miRNA: 3'- cucCGGUAGuaGGUCC------------UCCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 49857 | 0.71 | 0.40608 |
Target: 5'- gGAGGUCGUCAaagUCCaucaccgucGGGAGGCUgGGGu -3' miRNA: 3'- -CUCCGGUAGU---AGG---------UCCUCCGGgCCCu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 170437 | 0.72 | 0.343229 |
Target: 5'- cGGGGCCcggcgCGUgCCGGGGGaCCCGGGGg -3' miRNA: 3'- -CUCCGGua---GUA-GGUCCUCcGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 101633 | 0.72 | 0.365957 |
Target: 5'- uGGGCCAgcugCAUCUucgAGGAGGaCCCGGa- -3' miRNA: 3'- cUCCGGUa---GUAGG---UCCUCC-GGGCCcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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