Results 61 - 80 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28777 | 3' | -61.4 | NC_006146.1 | + | 41848 | 0.69 | 0.484809 |
Target: 5'- cGGGCCGUgG-CCAGG-GGCuaCCGGGGc -3' miRNA: 3'- cUCCGGUAgUaGGUCCuCCG--GGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 148214 | 0.69 | 0.522078 |
Target: 5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3' miRNA: 3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 145136 | 0.69 | 0.522078 |
Target: 5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3' miRNA: 3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 142058 | 0.69 | 0.522078 |
Target: 5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3' miRNA: 3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 32933 | 0.69 | 0.51265 |
Target: 5'- -cGGCCc----CCGGGAGGCCCGGc- -3' miRNA: 3'- cuCCGGuaguaGGUCCUCCGGGCCcu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 1443 | 0.69 | 0.503293 |
Target: 5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3' miRNA: 3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 61511 | 0.69 | 0.494011 |
Target: 5'- -cGGCCGUCcgAUCaGGGAGGCCUccgguguccggGGGAc -3' miRNA: 3'- cuCCGGUAG--UAGgUCCUCCGGG-----------CCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 125358 | 0.69 | 0.484809 |
Target: 5'- gGAGGCCAgggCGgccaagCCcaAGGAGGCCCaGGc -3' miRNA: 3'- -CUCCGGUa--GUa-----GG--UCCUCCGGGcCCu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 113588 | 0.69 | 0.483893 |
Target: 5'- aGAGaGCCAcgCGUCCAGGuccacaaAGGCCUccuGGGGg -3' miRNA: 3'- -CUC-CGGUa-GUAGGUCC-------UCCGGG---CCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 2375 | 0.69 | 0.503293 |
Target: 5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3' miRNA: 3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 154370 | 0.69 | 0.522078 |
Target: 5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3' miRNA: 3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 124684 | 0.69 | 0.531572 |
Target: 5'- -cGGCUucauuuUCcUCCAGGAaGCCUGGGAg -3' miRNA: 3'- cuCCGGu-----AGuAGGUCCUcCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 137039 | 0.69 | 0.531572 |
Target: 5'- gGAGGCCGggu----GGGGGCCUGGGGu -3' miRNA: 3'- -CUCCGGUaguagguCCUCCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 143555 | 0.68 | 0.570114 |
Target: 5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3' miRNA: 3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 146633 | 0.68 | 0.570114 |
Target: 5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3' miRNA: 3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 73032 | 0.68 | 0.570114 |
Target: 5'- cAGGCCcUCGuUCCAc--GGCCCGGGGu -3' miRNA: 3'- cUCCGGuAGU-AGGUccuCCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 22104 | 0.68 | 0.570114 |
Target: 5'- cGGGuGUCAUCAU-CGGGAaaGGCaCCGGGGa -3' miRNA: 3'- -CUC-CGGUAGUAgGUCCU--CCG-GGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 149710 | 0.68 | 0.570114 |
Target: 5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3' miRNA: 3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 155866 | 0.68 | 0.570114 |
Target: 5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3' miRNA: 3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 152788 | 0.68 | 0.570114 |
Target: 5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3' miRNA: 3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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