miRNA display CGI


Results 41 - 60 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 169109 0.71 0.397018
Target:  5'- -cGGCCAgUCccuggauGUCgGGGAgGGCCCGGGGc -3'
miRNA:   3'- cuCCGGU-AG-------UAGgUCCU-CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 168177 0.71 0.397018
Target:  5'- -cGGCCAgUCccuggauGUCgGGGAgGGCCCGGGGc -3'
miRNA:   3'- cuCCGGU-AG-------UAGgUCCU-CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 167245 0.71 0.397018
Target:  5'- -cGGCCAgUCccuggauGUCgGGGAgGGCCCGGGGc -3'
miRNA:   3'- cuCCGGU-AG-------UAGgUCCU-CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 44945 0.71 0.397837
Target:  5'- -uGGCCAggggCG-CgGGGAGGcCCCGGGGg -3'
miRNA:   3'- cuCCGGUa---GUaGgUCCUCC-GGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 49857 0.71 0.40608
Target:  5'- gGAGGUCGUCAaagUCCaucaccgucGGGAGGCUgGGGu -3'
miRNA:   3'- -CUCCGGUAGU---AGG---------UCCUCCGGgCCCu -5'
28777 3' -61.4 NC_006146.1 + 51572 0.71 0.414431
Target:  5'- uGGGCg--CcgCCGGGAggGGCCCGGGGg -3'
miRNA:   3'- cUCCGguaGuaGGUCCU--CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 129001 0.71 0.422886
Target:  5'- --uGCCGUCcgCCAGGcagacgcgacucAGGUCCGGGGc -3'
miRNA:   3'- cucCGGUAGuaGGUCC------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 137972 0.7 0.431444
Target:  5'- -cGGCCGggCcUCCcGGGGGCCCGGcGGg -3'
miRNA:   3'- cuCCGGUa-GuAGGuCCUCCGGGCC-CU- -5'
28777 3' -61.4 NC_006146.1 + 19965 0.7 0.431444
Target:  5'- aGGGCCGggggCGUCugcgagguCAGGAGGCCCcacgacgccGGGAa -3'
miRNA:   3'- cUCCGGUa---GUAG--------GUCCUCCGGG---------CCCU- -5'
28777 3' -61.4 NC_006146.1 + 110722 0.7 0.439232
Target:  5'- cGAGGCCAacuUUAUCaagaAGGAGGCCCugccggcuauccuGGGc -3'
miRNA:   3'- -CUCCGGU---AGUAGg---UCCUCCGGG-------------CCCu -5'
28777 3' -61.4 NC_006146.1 + 53315 0.7 0.439232
Target:  5'- -uGGCCGgaGUCCgagcccgAGGAGGCCCGGcGGc -3'
miRNA:   3'- cuCCGGUagUAGG-------UCCUCCGGGCC-CU- -5'
28777 3' -61.4 NC_006146.1 + 136760 0.7 0.440102
Target:  5'- --cGCCGgggC-UCCGGGAGGCCCGGc- -3'
miRNA:   3'- cucCGGUa--GuAGGUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 123146 0.7 0.45771
Target:  5'- gGAGGCCGUacucgCCagggcgcgcgAGGAGGCCCcGGAc -3'
miRNA:   3'- -CUCCGGUAgua--GG----------UCCUCCGGGcCCU- -5'
28777 3' -61.4 NC_006146.1 + 67313 0.7 0.475689
Target:  5'- cGGGCCA-CGUCCGcgcugagcccGGcccAGGCCCGGGc -3'
miRNA:   3'- cUCCGGUaGUAGGU----------CC---UCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 113588 0.69 0.483893
Target:  5'- aGAGaGCCAcgCGUCCAGGuccacaaAGGCCUccuGGGGg -3'
miRNA:   3'- -CUC-CGGUa-GUAGGUCC-------UCCGGG---CCCU- -5'
28777 3' -61.4 NC_006146.1 + 125358 0.69 0.484809
Target:  5'- gGAGGCCAgggCGgccaagCCcaAGGAGGCCCaGGc -3'
miRNA:   3'- -CUCCGGUa--GUa-----GG--UCCUCCGGGcCCu -5'
28777 3' -61.4 NC_006146.1 + 41848 0.69 0.484809
Target:  5'- cGGGCCGUgG-CCAGG-GGCuaCCGGGGc -3'
miRNA:   3'- cUCCGGUAgUaGGUCCuCCG--GGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 49048 0.69 0.492164
Target:  5'- cGAGaCCGUCGcgucguagacagCCAGGAGaCCCGGGAg -3'
miRNA:   3'- -CUCcGGUAGUa-----------GGUCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 61511 0.69 0.494011
Target:  5'- -cGGCCGUCcgAUCaGGGAGGCCUccgguguccggGGGAc -3'
miRNA:   3'- cuCCGGUAG--UAGgUCCUCCGGG-----------CCCU- -5'
28777 3' -61.4 NC_006146.1 + 38957 0.69 0.497715
Target:  5'- -uGGCCuuggCAUCCGGGuGGGCCCccagacucucgcagaGGGGg -3'
miRNA:   3'- cuCCGGua--GUAGGUCC-UCCGGG---------------CCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.