Results 61 - 80 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28777 | 3' | -61.4 | NC_006146.1 | + | 512 | 0.69 | 0.503293 |
Target: 5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3' miRNA: 3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 1443 | 0.69 | 0.503293 |
Target: 5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3' miRNA: 3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 2375 | 0.69 | 0.503293 |
Target: 5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3' miRNA: 3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 3307 | 0.69 | 0.503293 |
Target: 5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3' miRNA: 3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 32933 | 0.69 | 0.51265 |
Target: 5'- -cGGCCc----CCGGGAGGCCCGGc- -3' miRNA: 3'- cuCCGGuaguaGGUCCUCCGGGCCcu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 157448 | 0.69 | 0.522078 |
Target: 5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3' miRNA: 3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 151292 | 0.69 | 0.522078 |
Target: 5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3' miRNA: 3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 148214 | 0.69 | 0.522078 |
Target: 5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3' miRNA: 3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 145136 | 0.69 | 0.522078 |
Target: 5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3' miRNA: 3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 142058 | 0.69 | 0.522078 |
Target: 5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3' miRNA: 3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 154370 | 0.69 | 0.522078 |
Target: 5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3' miRNA: 3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 124684 | 0.69 | 0.531572 |
Target: 5'- -cGGCUucauuuUCcUCCAGGAaGCCUGGGAg -3' miRNA: 3'- cuCCGGu-----AGuAGGUCCUcCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 137039 | 0.69 | 0.531572 |
Target: 5'- gGAGGCCGggu----GGGGGCCUGGGGu -3' miRNA: 3'- -CUCCGGUaguagguCCUCCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 115445 | 0.68 | 0.541127 |
Target: 5'- -cGGCCAUCGagCGGGuGGCCaCGGu- -3' miRNA: 3'- cuCCGGUAGUagGUCCuCCGG-GCCcu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 155346 | 0.68 | 0.55074 |
Target: 5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3' miRNA: 3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 152268 | 0.68 | 0.55074 |
Target: 5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3' miRNA: 3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 149190 | 0.68 | 0.55074 |
Target: 5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3' miRNA: 3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 146112 | 0.68 | 0.55074 |
Target: 5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3' miRNA: 3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 143034 | 0.68 | 0.55074 |
Target: 5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3' miRNA: 3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 158425 | 0.68 | 0.55074 |
Target: 5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3' miRNA: 3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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