miRNA display CGI


Results 41 - 60 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 55244 0.71 0.389701
Target:  5'- cAGGUaCGUCGcCCGGGcGGCCCGGGc -3'
miRNA:   3'- cUCCG-GUAGUaGGUCCuCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 56284 0.67 0.599466
Target:  5'- gGAGGCCAggaCGUCCagcgccgccucgAGGuGGCCCaGGc -3'
miRNA:   3'- -CUCCGGUa--GUAGG------------UCCuCCGGGcCCu -5'
28777 3' -61.4 NC_006146.1 + 57210 0.66 0.6977
Target:  5'- --cGCCGUCc-CCGGGccggaggccGGGCCCGGGc -3'
miRNA:   3'- cucCGGUAGuaGGUCC---------UCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 61511 0.69 0.494011
Target:  5'- -cGGCCGUCcgAUCaGGGAGGCCUccgguguccggGGGAc -3'
miRNA:   3'- cuCCGGUAG--UAGgUCCUCCGGG-----------CCCU- -5'
28777 3' -61.4 NC_006146.1 + 61925 0.73 0.321537
Target:  5'- cGGGCCAUCAggggcUCCAGGGcccuGGuCCaCGGGAc -3'
miRNA:   3'- cUCCGGUAGU-----AGGUCCU----CC-GG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 63818 0.68 0.589651
Target:  5'- -uGGCCAcgacUAUCCAGGucuugccguGGCgCCGGGGa -3'
miRNA:   3'- cuCCGGUa---GUAGGUCCu--------CCG-GGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 64703 0.75 0.218008
Target:  5'- cAGGCCcugg--CAGGAGGCCCGGGAc -3'
miRNA:   3'- cUCCGGuaguagGUCCUCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 66850 0.66 0.707371
Target:  5'- aGAGGUCAUagaucuccccagCGUCCAGGGcGCCCcccGGGu -3'
miRNA:   3'- -CUCCGGUA------------GUAGGUCCUcCGGG---CCCu -5'
28777 3' -61.4 NC_006146.1 + 67230 0.68 0.579865
Target:  5'- -cGGCCAggcaCAggaagCCAcGGAGGCUgGGGGg -3'
miRNA:   3'- cuCCGGUa---GUa----GGU-CCUCCGGgCCCU- -5'
28777 3' -61.4 NC_006146.1 + 67313 0.7 0.475689
Target:  5'- cGGGCCA-CGUCCGcgcugagcccGGcccAGGCCCGGGc -3'
miRNA:   3'- cUCCGGUaGUAGGU----------CC---UCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 70834 0.66 0.6977
Target:  5'- uGGGGCCAagGgCCaAGcGGGCCCGGuGAg -3'
miRNA:   3'- -CUCCGGUagUaGG-UCcUCCGGGCC-CU- -5'
28777 3' -61.4 NC_006146.1 + 73032 0.68 0.570114
Target:  5'- cAGGCCcUCGuUCCAc--GGCCCGGGGu -3'
miRNA:   3'- cUCCGGuAGU-AGGUccuCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 75590 0.67 0.599466
Target:  5'- uGAGGCCGcCGUCCcgaucaagGGGGGGUaacgaaUGGGAg -3'
miRNA:   3'- -CUCCGGUaGUAGG--------UCCUCCGg-----GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 76732 0.71 0.37376
Target:  5'- cGAGGCCGaCAgcuUCguGGAGGCCCacGGGc -3'
miRNA:   3'- -CUCCGGUaGU---AGguCCUCCGGG--CCCu -5'
28777 3' -61.4 NC_006146.1 + 78816 0.72 0.335883
Target:  5'- gGAGGCCcacgCGUCCAGGcAGccguGUCCGGGGg -3'
miRNA:   3'- -CUCCGGua--GUAGGUCC-UC----CGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 88339 0.68 0.579865
Target:  5'- gGAGGCCGUUGggcCCAGGGGGUUaaaGGAg -3'
miRNA:   3'- -CUCCGGUAGUa--GGUCCUCCGGgc-CCU- -5'
28777 3' -61.4 NC_006146.1 + 90283 0.67 0.629017
Target:  5'- aGAGGCCGUgGUCgAGGAcgaggaaggGGCagaGGGGa -3'
miRNA:   3'- -CUCCGGUAgUAGgUCCU---------CCGgg-CCCU- -5'
28777 3' -61.4 NC_006146.1 + 93695 0.72 0.335883
Target:  5'- gGAGGCaua-GUCCAGGAGGCCgUGGaGAc -3'
miRNA:   3'- -CUCCGguagUAGGUCCUCCGG-GCC-CU- -5'
28777 3' -61.4 NC_006146.1 + 94790 0.76 0.188901
Target:  5'- cGGGCCA-CGUCCacguAGGccAGGCCCGGGGg -3'
miRNA:   3'- cUCCGGUaGUAGG----UCC--UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 96441 0.71 0.381675
Target:  5'- aAGGCCAUCGUgggCCAuGGGGGCa-GGGAc -3'
miRNA:   3'- cUCCGGUAGUA---GGU-CCUCCGggCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.