miRNA display CGI


Results 81 - 100 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 123587 1.08 0.001183
Target:  5'- gGAGGCCAUCAUCCAGGAGGCCCGGGAg -3'
miRNA:   3'- -CUCCGGUAGUAGGUCCUCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 124684 0.69 0.531572
Target:  5'- -cGGCUucauuuUCcUCCAGGAaGCCUGGGAg -3'
miRNA:   3'- cuCCGGu-----AGuAGGUCCUcCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 125358 0.69 0.484809
Target:  5'- gGAGGCCAgggCGgccaagCCcaAGGAGGCCCaGGc -3'
miRNA:   3'- -CUCCGGUa--GUa-----GG--UCCUCCGGGcCCu -5'
28777 3' -61.4 NC_006146.1 + 126296 0.67 0.599466
Target:  5'- -uGGCCAuucuaUCAUgcaaCGGGAaaggcagcGGCCCGGGGg -3'
miRNA:   3'- cuCCGGU-----AGUAg---GUCCU--------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 127055 0.66 0.658587
Target:  5'- aGAGGCCcUCGagCuGGcGGCgCGGGAa -3'
miRNA:   3'- -CUCCGGuAGUagGuCCuCCGgGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 128503 0.67 0.609302
Target:  5'- cGAGGaCggCGUCgGGGuGGCCCuGGGGc -3'
miRNA:   3'- -CUCCgGuaGUAGgUCCuCCGGG-CCCU- -5'
28777 3' -61.4 NC_006146.1 + 129001 0.71 0.422886
Target:  5'- --uGCCGUCcgCCAGGcagacgcgacucAGGUCCGGGGc -3'
miRNA:   3'- cucCGGUAGuaGGUCC------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 131468 0.67 0.609302
Target:  5'- aGGGCCcagugCAcCCAGGuGGGUCUGGGGu -3'
miRNA:   3'- cUCCGGua---GUaGGUCC-UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 136760 0.7 0.440102
Target:  5'- --cGCCGgggC-UCCGGGAGGCCCGGc- -3'
miRNA:   3'- cucCGGUa--GuAGGUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 137039 0.69 0.531572
Target:  5'- gGAGGCCGggu----GGGGGCCUGGGGu -3'
miRNA:   3'- -CUCCGGUaguagguCCUCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 137972 0.7 0.431444
Target:  5'- -cGGCCGggCcUCCcGGGGGCCCGGcGGg -3'
miRNA:   3'- cuCCGGUa-GuAGGuCCUCCGGGCC-CU- -5'
28777 3' -61.4 NC_006146.1 + 142058 0.69 0.522078
Target:  5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3'
miRNA:   3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 142336 0.75 0.238922
Target:  5'- cGAGGCCGggCAggCCGGGcaggccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- -CUCCGGUa-GUa-GGUCC-------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 143034 0.68 0.55074
Target:  5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3'
miRNA:   3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 143555 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 145136 0.69 0.522078
Target:  5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3'
miRNA:   3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 145414 0.75 0.238922
Target:  5'- cGAGGCCGggCAggCCGGGcaggccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- -CUCCGGUa-GUa-GGUCC-------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 146112 0.68 0.55074
Target:  5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3'
miRNA:   3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 146631 0.66 0.678214
Target:  5'- -cGGCCAggGUCac-GAGGCCUGGGu -3'
miRNA:   3'- cuCCGGUagUAGgucCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 146633 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.