miRNA display CGI


Results 101 - 120 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 146766 0.67 0.629017
Target:  5'- aGAGGCCgaGUCAcgcgaCAGGuacAGGCCCGGu- -3'
miRNA:   3'- -CUCCGG--UAGUag---GUCC---UCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 146828 0.67 0.599466
Target:  5'- cGAGGCCG-CG-CCAGcGuAGaGCCCGGGc -3'
miRNA:   3'- -CUCCGGUaGUaGGUC-C-UC-CGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 148214 0.69 0.522078
Target:  5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3'
miRNA:   3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 148492 0.75 0.238922
Target:  5'- cGAGGCCGggCAggCCGGGcaggccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- -CUCCGGUa-GUa-GGUCC-------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 149190 0.68 0.55074
Target:  5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3'
miRNA:   3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 149710 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 150544 0.66 0.6977
Target:  5'- uGGGCCG-CggCCAGGAGGCa-GGaGAa -3'
miRNA:   3'- cUCCGGUaGuaGGUCCUCCGggCC-CU- -5'
28777 3' -61.4 NC_006146.1 + 150583 0.67 0.629017
Target:  5'- -uGGCCAUCGUCCAGcacccGCCUgcagGGGAu -3'
miRNA:   3'- cuCCGGUAGUAGGUCcuc--CGGG----CCCU- -5'
28777 3' -61.4 NC_006146.1 + 151292 0.69 0.522078
Target:  5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3'
miRNA:   3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 151296 0.67 0.609302
Target:  5'- aAGGCCAgggcCGUgUAGGAGGgCCaGGAg -3'
miRNA:   3'- cUCCGGUa---GUAgGUCCUCCgGGcCCU- -5'
28777 3' -61.4 NC_006146.1 + 151570 0.75 0.238922
Target:  5'- cGAGGCCGggCAggCCGGGcaggccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- -CUCCGGUa-GUa-GGUCC-------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 152036 0.67 0.608318
Target:  5'- uGAGGCCcccgcaCGUCCAccaccccGGcAGcGCCCGGGGu -3'
miRNA:   3'- -CUCCGGua----GUAGGU-------CC-UC-CGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 152268 0.68 0.55074
Target:  5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3'
miRNA:   3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 152788 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 154370 0.69 0.522078
Target:  5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3'
miRNA:   3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 154648 0.75 0.238922
Target:  5'- cGAGGCCGggCAggCCGGGcaggccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- -CUCCGGUa-GUa-GGUCC-------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 155346 0.68 0.55074
Target:  5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3'
miRNA:   3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 155866 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 157448 0.69 0.522078
Target:  5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3'
miRNA:   3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 157725 0.75 0.238922
Target:  5'- cGAGGCCGggCAggCCGGGcaggccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- -CUCCGGUa-GUa-GGUCC-------------UCCGGGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.