miRNA display CGI


Results 21 - 40 of 153 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 168235 0.66 0.668414
Target:  5'- aGGGGCCggCG-CCugcagGGGGGGCCggCGGGGc -3'
miRNA:   3'- -CUCCGGuaGUaGG-----UCCUCCGG--GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 168177 0.71 0.397018
Target:  5'- -cGGCCAgUCccuggauGUCgGGGAgGGCCCGGGGc -3'
miRNA:   3'- cuCCGGU-AG-------UAGgUCCU-CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 168115 0.68 0.55074
Target:  5'- gGAGGCCGgcgCGcgCCcGGGGuCCCGGGGg -3'
miRNA:   3'- -CUCCGGUa--GUa-GGuCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 167711 0.66 0.6977
Target:  5'- cGGGGCCcgagcgcgCGUCgGGuGGGGCCUGaGGGg -3'
miRNA:   3'- -CUCCGGua------GUAGgUC-CUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 167642 0.77 0.175669
Target:  5'- cGGGGCCcggcgCGUgCCGGG-GGCCCGGGGg -3'
miRNA:   3'- -CUCCGGua---GUA-GGUCCuCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 167593 0.73 0.287696
Target:  5'- gGAGGCCGggCcUCCccuGGGGGCCuCGGGGg -3'
miRNA:   3'- -CUCCGGUa-GuAGGu--CCUCCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 167555 0.73 0.287696
Target:  5'- gGAGGCCAcg--UguGGAGGCCCGcGGAg -3'
miRNA:   3'- -CUCCGGUaguaGguCCUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 167409 0.68 0.55074
Target:  5'- cGGGGCCuggCGggggCCAGcgcGGGGuCCCGGGGc -3'
miRNA:   3'- -CUCCGGua-GUa---GGUC---CUCC-GGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 167303 0.66 0.668414
Target:  5'- aGGGGCCggCG-CCugcagGGGGGGCCggCGGGGc -3'
miRNA:   3'- -CUCCGGuaGUaGG-----UCCUCCGG--GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 167245 0.71 0.397018
Target:  5'- -cGGCCAgUCccuggauGUCgGGGAgGGCCCGGGGc -3'
miRNA:   3'- cuCCGGU-AG-------UAGgUCCU-CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 167183 0.68 0.55074
Target:  5'- gGAGGCCGgcgCGcgCCcGGGGuCCCGGGGg -3'
miRNA:   3'- -CUCCGGUa--GUa-GGuCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 164229 0.66 0.687979
Target:  5'- cGGGCCAUUGUuaccaccaUCAGuGGGGCCUGGuGGg -3'
miRNA:   3'- cUCCGGUAGUA--------GGUC-CUCCGGGCC-CU- -5'
28777 3' -61.4 NC_006146.1 + 158425 0.68 0.55074
Target:  5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3'
miRNA:   3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 157725 0.75 0.238922
Target:  5'- cGAGGCCGggCAggCCGGGcaggccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- -CUCCGGUa-GUa-GGUCC-------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 157448 0.69 0.522078
Target:  5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3'
miRNA:   3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 155866 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 155346 0.68 0.55074
Target:  5'- gGAaGCCGgaGUCCAGaGGGGCCCGaGGGc -3'
miRNA:   3'- -CUcCGGUagUAGGUC-CUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 154648 0.75 0.238922
Target:  5'- cGAGGCCGggCAggCCGGGcaggccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- -CUCCGGUa-GUa-GGUCC-------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 154370 0.69 0.522078
Target:  5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3'
miRNA:   3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 152788 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.