miRNA display CGI


Results 81 - 100 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 117502 0.66 0.687979
Target:  5'- -uGGCC----UCCuGGAGGCCaGGGAa -3'
miRNA:   3'- cuCCGGuaguAGGuCCUCCGGgCCCU- -5'
28777 3' -61.4 NC_006146.1 + 117127 0.66 0.687979
Target:  5'- cGAGGCCcUCGUCCGGcGAGaccuccGCCCGc-- -3'
miRNA:   3'- -CUCCGGuAGUAGGUC-CUC------CGGGCccu -5'
28777 3' -61.4 NC_006146.1 + 115445 0.68 0.541127
Target:  5'- -cGGCCAUCGagCGGGuGGCCaCGGu- -3'
miRNA:   3'- cuCCGGUAGUagGUCCuCCGG-GCCcu -5'
28777 3' -61.4 NC_006146.1 + 115394 0.66 0.687979
Target:  5'- -uGGCCGcucgCGUgCAGGAGGCagcuggcggCCGGGc -3'
miRNA:   3'- cuCCGGUa---GUAgGUCCUCCG---------GGCCCu -5'
28777 3' -61.4 NC_006146.1 + 114729 0.66 0.707371
Target:  5'- -cGGCCGaguaucggcgCAUCCucaAGGAcGGCCgCGGGGa -3'
miRNA:   3'- cuCCGGUa---------GUAGG---UCCU-CCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 114224 0.75 0.218008
Target:  5'- aGGGCCAgcc-CCAGGGGGCCCGGc- -3'
miRNA:   3'- cUCCGGUaguaGGUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 113588 0.69 0.483893
Target:  5'- aGAGaGCCAcgCGUCCAGGuccacaaAGGCCUccuGGGGg -3'
miRNA:   3'- -CUC-CGGUa-GUAGGUCC-------UCCGGG---CCCU- -5'
28777 3' -61.4 NC_006146.1 + 110722 0.7 0.439232
Target:  5'- cGAGGCCAacuUUAUCaagaAGGAGGCCCugccggcuauccuGGGc -3'
miRNA:   3'- -CUCCGGU---AGUAGg---UCCUCCGGG-------------CCCu -5'
28777 3' -61.4 NC_006146.1 + 105173 0.76 0.203002
Target:  5'- aGAGGCCGcacCGUCCAGugaccGGGGCCgGGGAg -3'
miRNA:   3'- -CUCCGGUa--GUAGGUC-----CUCCGGgCCCU- -5'
28777 3' -61.4 NC_006146.1 + 103580 0.68 0.57401
Target:  5'- cGGGCCuggg-CCGGGcucagcgcggacguGGCCCGGGAg -3'
miRNA:   3'- cUCCGGuaguaGGUCCu-------------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 102569 0.66 0.658587
Target:  5'- gGAGGCCGUCcucgacgccAUCCucucGcGGCCCGaGGAg -3'
miRNA:   3'- -CUCCGGUAG---------UAGGuc--CuCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 101633 0.72 0.365957
Target:  5'- uGGGCCAgcugCAUCUucgAGGAGGaCCCGGa- -3'
miRNA:   3'- cUCCGGUa---GUAGG---UCCUCC-GGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 99559 0.66 0.687979
Target:  5'- cGGGGCagagAUCgggGUCCAGGAGGUagaagaCGGGc -3'
miRNA:   3'- -CUCCGg---UAG---UAGGUCCUCCGg-----GCCCu -5'
28777 3' -61.4 NC_006146.1 + 96441 0.71 0.381675
Target:  5'- aAGGCCAUCGUgggCCAuGGGGGCa-GGGAc -3'
miRNA:   3'- cUCCGGUAGUA---GGU-CCUCCGggCCCU- -5'
28777 3' -61.4 NC_006146.1 + 94790 0.76 0.188901
Target:  5'- cGGGCCA-CGUCCacguAGGccAGGCCCGGGGg -3'
miRNA:   3'- cUCCGGUaGUAGG----UCC--UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 93695 0.72 0.335883
Target:  5'- gGAGGCaua-GUCCAGGAGGCCgUGGaGAc -3'
miRNA:   3'- -CUCCGguagUAGGUCCUCCGG-GCC-CU- -5'
28777 3' -61.4 NC_006146.1 + 90283 0.67 0.629017
Target:  5'- aGAGGCCGUgGUCgAGGAcgaggaaggGGCagaGGGGa -3'
miRNA:   3'- -CUCCGGUAgUAGgUCCU---------CCGgg-CCCU- -5'
28777 3' -61.4 NC_006146.1 + 88339 0.68 0.579865
Target:  5'- gGAGGCCGUUGggcCCAGGGGGUUaaaGGAg -3'
miRNA:   3'- -CUCCGGUAGUa--GGUCCUCCGGgc-CCU- -5'
28777 3' -61.4 NC_006146.1 + 78816 0.72 0.335883
Target:  5'- gGAGGCCcacgCGUCCAGGcAGccguGUCCGGGGg -3'
miRNA:   3'- -CUCCGGua--GUAGGUCC-UC----CGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 76732 0.71 0.37376
Target:  5'- cGAGGCCGaCAgcuUCguGGAGGCCCacGGGc -3'
miRNA:   3'- -CUCCGGUaGU---AGguCCUCCGGG--CCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.