miRNA display CGI


Results 41 - 60 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 169273 0.68 0.55074
Target:  5'- cGGGGCCuggCGggggCCAGcgcGGGGuCCCGGGGc -3'
miRNA:   3'- -CUCCGGua-GUa---GGUC---CUCC-GGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 167245 0.71 0.397018
Target:  5'- -cGGCCAgUCccuggauGUCgGGGAgGGCCCGGGGc -3'
miRNA:   3'- cuCCGGU-AG-------UAGgUCCU-CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 114224 0.75 0.218008
Target:  5'- aGGGCCAgcc-CCAGGGGGCCCGGc- -3'
miRNA:   3'- cUCCGGUaguaGGUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 168341 0.68 0.55074
Target:  5'- cGGGGCCuggCGggggCCAGcgcGGGGuCCCGGGGc -3'
miRNA:   3'- -CUCCGGua-GUa---GGUC---CUCC-GGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 94790 0.76 0.188901
Target:  5'- cGGGCCA-CGUCCacguAGGccAGGCCCGGGGg -3'
miRNA:   3'- cUCCGGUaGUAGG----UCC--UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 167303 0.66 0.668414
Target:  5'- aGGGGCCggCG-CCugcagGGGGGGCCggCGGGGc -3'
miRNA:   3'- -CUCCGGuaGUaGG-----UCCUCCGG--GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 168487 0.73 0.287696
Target:  5'- gGAGGCCAcg--UguGGAGGCCCGcGGAg -3'
miRNA:   3'- -CUCCGGUaguaGguCCUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 48340 0.67 0.638881
Target:  5'- uGGGCCAggCGUCCAGucuGGCCagCGGGc -3'
miRNA:   3'- cUCCGGUa-GUAGGUCcu-CCGG--GCCCu -5'
28777 3' -61.4 NC_006146.1 + 150583 0.67 0.629017
Target:  5'- -uGGCCAUCGUCCAGcacccGCCUgcagGGGAu -3'
miRNA:   3'- cuCCGGUAGUAGGUCcuc--CGGG----CCCU- -5'
28777 3' -61.4 NC_006146.1 + 41591 0.67 0.609302
Target:  5'- -uGGCCGagG--CGGaGAGGCCCGGGGg -3'
miRNA:   3'- cuCCGGUagUagGUC-CUCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 146828 0.67 0.599466
Target:  5'- cGAGGCCG-CG-CCAGcGuAGaGCCCGGGc -3'
miRNA:   3'- -CUCCGGUaGUaGGUC-C-UC-CGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 169979 0.68 0.55074
Target:  5'- gGAGGCCGgcgCGcgCCcGGGGuCCCGGGGg -3'
miRNA:   3'- -CUCCGGUa--GUa-GGuCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 167183 0.68 0.55074
Target:  5'- gGAGGCCGgcgCGcgCCcGGGGuCCCGGGGg -3'
miRNA:   3'- -CUCCGGUa--GUa-GGuCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 49048 0.69 0.492164
Target:  5'- cGAGaCCGUCGcgucguagacagCCAGGAGaCCCGGGAg -3'
miRNA:   3'- -CUCcGGUAGUa-----------GGUCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 110722 0.7 0.439232
Target:  5'- cGAGGCCAacuUUAUCaagaAGGAGGCCCugccggcuauccuGGGc -3'
miRNA:   3'- -CUCCGGU---AGUAGg---UCCUCCGGG-------------CCCu -5'
28777 3' -61.4 NC_006146.1 + 49857 0.71 0.40608
Target:  5'- gGAGGUCGUCAaagUCCaucaccgucGGGAGGCUgGGGu -3'
miRNA:   3'- -CUCCGGUAGU---AGG---------UCCUCCGGgCCCu -5'
28777 3' -61.4 NC_006146.1 + 169109 0.71 0.397018
Target:  5'- -cGGCCAgUCccuggauGUCgGGGAgGGCCCGGGGc -3'
miRNA:   3'- cuCCGGU-AG-------UAGgUCCU-CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 170437 0.72 0.343229
Target:  5'- cGGGGCCcggcgCGUgCCGGGGGaCCCGGGGg -3'
miRNA:   3'- -CUCCGGua---GUA-GGUCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 93695 0.72 0.335883
Target:  5'- gGAGGCaua-GUCCAGGAGGCCgUGGaGAc -3'
miRNA:   3'- -CUCCGguagUAGGUCCUCCGG-GCC-CU- -5'
28777 3' -61.4 NC_006146.1 + 167593 0.73 0.287696
Target:  5'- gGAGGCCGggCcUCCccuGGGGGCCuCGGGGg -3'
miRNA:   3'- -CUCCGGUa-GuAGGu--CCUCCGG-GCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.