miRNA display CGI


Results 61 - 80 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 169167 0.66 0.668414
Target:  5'- aGGGGCCggCG-CCugcagGGGGGGCCggCGGGGc -3'
miRNA:   3'- -CUCCGGuaGUaGG-----UCCUCCGG--GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 170350 0.73 0.287696
Target:  5'- gGAGGCCAcg--UguGGAGGCCCGcGGAg -3'
miRNA:   3'- -CUCCGGUaguaGguCCUCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 169457 0.73 0.287696
Target:  5'- gGAGGCCGggCcUCCccuGGGGGCCuCGGGGg -3'
miRNA:   3'- -CUCCGGUa-GuAGGu--CCUCCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 169506 0.72 0.343229
Target:  5'- cGGGGCCcggcgCGUgCCGGGGGaCCCGGGGg -3'
miRNA:   3'- -CUCCGGua---GUA-GGUCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 55244 0.71 0.389701
Target:  5'- cAGGUaCGUCGcCCGGGcGGCCCGGGc -3'
miRNA:   3'- cUCCG-GUAGUaGGUCCuCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 44945 0.71 0.397837
Target:  5'- -uGGCCAggggCG-CgGGGAGGcCCCGGGGg -3'
miRNA:   3'- cuCCGGUa---GUaGgUCCUCC-GGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 137972 0.7 0.431444
Target:  5'- -cGGCCGggCcUCCcGGGGGCCCGGcGGg -3'
miRNA:   3'- cuCCGGUa-GuAGGuCCUCCGGGCC-CU- -5'
28777 3' -61.4 NC_006146.1 + 117502 0.66 0.687979
Target:  5'- -uGGCC----UCCuGGAGGCCaGGGAa -3'
miRNA:   3'- cuCCGGuaguAGGuCCUCCGGgCCCU- -5'
28777 3' -61.4 NC_006146.1 + 146631 0.66 0.678214
Target:  5'- -cGGCCAggGUCac-GAGGCCUGGGu -3'
miRNA:   3'- cuCCGGUagUAGgucCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 167303 0.66 0.668414
Target:  5'- aGGGGCCggCG-CCugcagGGGGGGCCggCGGGGc -3'
miRNA:   3'- -CUCCGGuaGUaGG-----UCCUCCGG--GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 131468 0.67 0.609302
Target:  5'- aGGGCCcagugCAcCCAGGuGGGUCUGGGGu -3'
miRNA:   3'- cUCCGGua---GUaGGUCC-UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 151296 0.67 0.609302
Target:  5'- aAGGCCAgggcCGUgUAGGAGGgCCaGGAg -3'
miRNA:   3'- cUCCGGUa---GUAgGUCCUCCgGGcCCU- -5'
28777 3' -61.4 NC_006146.1 + 48340 0.67 0.638881
Target:  5'- uGGGCCAggCGUCCAGucuGGCCagCGGGc -3'
miRNA:   3'- cUCCGGUa-GUAGGUCcu-CCGG--GCCCu -5'
28777 3' -61.4 NC_006146.1 + 143555 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 7914 0.71 0.389701
Target:  5'- gGAGGCCGagGagaAGGGGGaCCCGGGAa -3'
miRNA:   3'- -CUCCGGUagUaggUCCUCC-GGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 101633 0.72 0.365957
Target:  5'- uGGGCCAgcugCAUCUucgAGGAGGaCCCGGa- -3'
miRNA:   3'- cUCCGGUa---GUAGG---UCCUCC-GGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 168482 0.72 0.358267
Target:  5'- -cGGCCucaCGUCCacggucGGGGGGCCgGGGAc -3'
miRNA:   3'- cuCCGGua-GUAGG------UCCUCCGGgCCCU- -5'
28777 3' -61.4 NC_006146.1 + 76732 0.71 0.37376
Target:  5'- cGAGGCCGaCAgcuUCguGGAGGCCCacGGGc -3'
miRNA:   3'- -CUCCGGUaGU---AGguCCUCCGGG--CCCu -5'
28777 3' -61.4 NC_006146.1 + 146633 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 26296 0.67 0.638881
Target:  5'- aGGGGCCggCAUCU-GGAGGCgUGGa- -3'
miRNA:   3'- -CUCCGGuaGUAGGuCCUCCGgGCCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.