miRNA display CGI


Results 81 - 100 of 153 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 155866 0.68 0.570114
Target:  5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3'
miRNA:   3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 22104 0.68 0.570114
Target:  5'- cGGGuGUCAUCAU-CGGGAaaGGCaCCGGGGa -3'
miRNA:   3'- -CUC-CGGUAGUAgGUCCU--CCG-GGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 73032 0.68 0.570114
Target:  5'- cAGGCCcUCGuUCCAc--GGCCCGGGGu -3'
miRNA:   3'- cUCCGGuAGU-AGGUccuCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 103580 0.68 0.57401
Target:  5'- cGGGCCuggg-CCGGGcucagcgcggacguGGCCCGGGAg -3'
miRNA:   3'- cUCCGGuaguaGGUCCu-------------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 26296 0.67 0.638881
Target:  5'- aGGGGCCggCAUCU-GGAGGCgUGGa- -3'
miRNA:   3'- -CUCCGGuaGUAGGuCCUCCGgGCCcu -5'
28777 3' -61.4 NC_006146.1 + 43268 0.67 0.64874
Target:  5'- aGAGGCaCAgggCggCCuGGAGGUCCGGc- -3'
miRNA:   3'- -CUCCG-GUa--GuaGGuCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 2375 0.69 0.503293
Target:  5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3'
miRNA:   3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 1443 0.69 0.503293
Target:  5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3'
miRNA:   3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 512 0.69 0.503293
Target:  5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3'
miRNA:   3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 101633 0.72 0.365957
Target:  5'- uGGGCCAgcugCAUCUucgAGGAGGaCCCGGa- -3'
miRNA:   3'- cUCCGGUa---GUAGG---UCCUCC-GGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 26112 0.72 0.365957
Target:  5'- gGAGGCCAcaauUgGUCCAuGGAaaGGCaCCGGGGc -3'
miRNA:   3'- -CUCCGGU----AgUAGGU-CCU--CCG-GGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 76732 0.71 0.37376
Target:  5'- cGAGGCCGaCAgcuUCguGGAGGCCCacGGGc -3'
miRNA:   3'- -CUCCGGUaGU---AGguCCUCCGGG--CCCu -5'
28777 3' -61.4 NC_006146.1 + 7914 0.71 0.389701
Target:  5'- gGAGGCCGagGagaAGGGGGaCCCGGGAa -3'
miRNA:   3'- -CUCCGGUagUaggUCCUCC-GGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 51572 0.71 0.414431
Target:  5'- uGGGCg--CcgCCGGGAggGGCCCGGGGg -3'
miRNA:   3'- cUCCGguaGuaGGUCCU--CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 19965 0.7 0.431444
Target:  5'- aGGGCCGggggCGUCugcgagguCAGGAGGCCCcacgacgccGGGAa -3'
miRNA:   3'- cUCCGGUa---GUAG--------GUCCUCCGGG---------CCCU- -5'
28777 3' -61.4 NC_006146.1 + 136760 0.7 0.440102
Target:  5'- --cGCCGgggC-UCCGGGAGGCCCGGc- -3'
miRNA:   3'- cucCGGUa--GuAGGUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 123146 0.7 0.45771
Target:  5'- gGAGGCCGUacucgCCagggcgcgcgAGGAGGCCCcGGAc -3'
miRNA:   3'- -CUCCGGUAgua--GG----------UCCUCCGGGcCCU- -5'
28777 3' -61.4 NC_006146.1 + 113588 0.69 0.483893
Target:  5'- aGAGaGCCAcgCGUCCAGGuccacaaAGGCCUccuGGGGg -3'
miRNA:   3'- -CUC-CGGUa-GUAGGUCC-------UCCGGG---CCCU- -5'
28777 3' -61.4 NC_006146.1 + 125358 0.69 0.484809
Target:  5'- gGAGGCCAgggCGgccaagCCcaAGGAGGCCCaGGc -3'
miRNA:   3'- -CUCCGGUa--GUa-----GG--UCCUCCGGGcCCu -5'
28777 3' -61.4 NC_006146.1 + 61511 0.69 0.494011
Target:  5'- -cGGCCGUCcgAUCaGGGAGGCCUccgguguccggGGGAc -3'
miRNA:   3'- cuCCGGUAG--UAGgUCCUCCGGG-----------CCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.