Results 101 - 120 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28777 | 3' | -61.4 | NC_006146.1 | + | 168482 | 0.72 | 0.358267 |
Target: 5'- -cGGCCucaCGUCCacggucGGGGGGCCgGGGAc -3' miRNA: 3'- cuCCGGua-GUAGG------UCCUCCGGgCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 101633 | 0.72 | 0.365957 |
Target: 5'- uGGGCCAgcugCAUCUucgAGGAGGaCCCGGa- -3' miRNA: 3'- cUCCGGUa---GUAGG---UCCUCC-GGGCCcu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 123146 | 0.7 | 0.45771 |
Target: 5'- gGAGGCCGUacucgCCagggcgcgcgAGGAGGCCCcGGAc -3' miRNA: 3'- -CUCCGGUAgua--GG----------UCCUCCGGGcCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 76732 | 0.71 | 0.37376 |
Target: 5'- cGAGGCCGaCAgcuUCguGGAGGCCCacGGGc -3' miRNA: 3'- -CUCCGGUaGU---AGguCCUCCGGG--CCCu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 7914 | 0.71 | 0.389701 |
Target: 5'- gGAGGCCGagGagaAGGGGGaCCCGGGAa -3' miRNA: 3'- -CUCCGGUagUaggUCCUCC-GGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 51572 | 0.71 | 0.414431 |
Target: 5'- uGGGCg--CcgCCGGGAggGGCCCGGGGg -3' miRNA: 3'- cUCCGguaGuaGGUCCU--CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 32933 | 0.69 | 0.51265 |
Target: 5'- -cGGCCc----CCGGGAGGCCCGGc- -3' miRNA: 3'- cuCCGGuaguaGGUCCUCCGGGCCcu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 136760 | 0.7 | 0.440102 |
Target: 5'- --cGCCGgggC-UCCGGGAGGCCCGGc- -3' miRNA: 3'- cucCGGUa--GuAGGUCCUCCGGGCCcu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 149710 | 0.68 | 0.570114 |
Target: 5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3' miRNA: 3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 146633 | 0.68 | 0.570114 |
Target: 5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3' miRNA: 3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 143555 | 0.68 | 0.570114 |
Target: 5'- -uGGCCcgagaCCuGGGGGCCCGGGc -3' miRNA: 3'- cuCCGGuaguaGGuCCUCCGGGCCCu -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 137039 | 0.69 | 0.531572 |
Target: 5'- gGAGGCCGggu----GGGGGCCUGGGGu -3' miRNA: 3'- -CUCCGGUaguagguCCUCCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 123587 | 1.08 | 0.001183 |
Target: 5'- gGAGGCCAUCAUCCAGGAGGCCCGGGAg -3' miRNA: 3'- -CUCCGGUAGUAGGUCCUCCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 105173 | 0.76 | 0.203002 |
Target: 5'- aGAGGCCGcacCGUCCAGugaccGGGGCCgGGGAg -3' miRNA: 3'- -CUCCGGUa--GUAGGUC-----CUCCGGgCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 157448 | 0.69 | 0.522078 |
Target: 5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3' miRNA: 3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 154370 | 0.69 | 0.522078 |
Target: 5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3' miRNA: 3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 142058 | 0.69 | 0.522078 |
Target: 5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3' miRNA: 3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 151292 | 0.69 | 0.522078 |
Target: 5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3' miRNA: 3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 148214 | 0.69 | 0.522078 |
Target: 5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3' miRNA: 3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5' |
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28777 | 3' | -61.4 | NC_006146.1 | + | 145136 | 0.69 | 0.522078 |
Target: 5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3' miRNA: 3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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