miRNA display CGI


Results 121 - 140 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 154648 0.75 0.238922
Target:  5'- cGAGGCCGggCAggCCGGGcaggccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- -CUCCGGUa-GUa-GGUCC-------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 151570 0.75 0.238922
Target:  5'- cGAGGCCGggCAggCCGGGcaggccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- -CUCCGGUa-GUa-GGUCC-------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 148492 0.75 0.238922
Target:  5'- cGAGGCCGggCAggCCGGGcaggccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- -CUCCGGUa-GUa-GGUCC-------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 145414 0.75 0.238922
Target:  5'- cGAGGCCGggCAggCCGGGcaggccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- -CUCCGGUa-GUa-GGUCC-------------UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 7914 0.71 0.389701
Target:  5'- gGAGGCCGagGagaAGGGGGaCCCGGGAa -3'
miRNA:   3'- -CUCCGGUagUaggUCCUCC-GGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 51572 0.71 0.414431
Target:  5'- uGGGCg--CcgCCGGGAggGGCCCGGGGg -3'
miRNA:   3'- cUCCGguaGuaGGUCCU--CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 19965 0.7 0.431444
Target:  5'- aGGGCCGggggCGUCugcgagguCAGGAGGCCCcacgacgccGGGAa -3'
miRNA:   3'- cUCCGGUa---GUAG--------GUCCUCCGGG---------CCCU- -5'
28777 3' -61.4 NC_006146.1 + 151292 0.69 0.522078
Target:  5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3'
miRNA:   3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 148214 0.69 0.522078
Target:  5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3'
miRNA:   3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 145136 0.69 0.522078
Target:  5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3'
miRNA:   3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 142058 0.69 0.522078
Target:  5'- uGGGGCCAccCGggcugCCGGGGucccuccggcuGGCCUGGGAc -3'
miRNA:   3'- -CUCCGGUa-GUa----GGUCCU-----------CCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 32933 0.69 0.51265
Target:  5'- -cGGCCc----CCGGGAGGCCCGGc- -3'
miRNA:   3'- cuCCGGuaguaGGUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 3307 0.69 0.503293
Target:  5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3'
miRNA:   3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 2375 0.69 0.503293
Target:  5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3'
miRNA:   3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 1443 0.69 0.503293
Target:  5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3'
miRNA:   3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 512 0.69 0.503293
Target:  5'- cGAGGCCccCAg--GGGAGGCCCGGc- -3'
miRNA:   3'- -CUCCGGuaGUaggUCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 61511 0.69 0.494011
Target:  5'- -cGGCCGUCcgAUCaGGGAGGCCUccgguguccggGGGAc -3'
miRNA:   3'- cuCCGGUAG--UAGgUCCUCCGGG-----------CCCU- -5'
28777 3' -61.4 NC_006146.1 + 125358 0.69 0.484809
Target:  5'- gGAGGCCAgggCGgccaagCCcaAGGAGGCCCaGGc -3'
miRNA:   3'- -CUCCGGUa--GUa-----GG--UCCUCCGGGcCCu -5'
28777 3' -61.4 NC_006146.1 + 123146 0.7 0.45771
Target:  5'- gGAGGCCGUacucgCCagggcgcgcgAGGAGGCCCcGGAc -3'
miRNA:   3'- -CUCCGGUAgua--GG----------UCCUCCGGGcCCU- -5'
28777 3' -61.4 NC_006146.1 + 136760 0.7 0.440102
Target:  5'- --cGCCGgggC-UCCGGGAGGCCCGGc- -3'
miRNA:   3'- cucCGGUa--GuAGGUCCUCCGGGCCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.