miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 117502 0.66 0.687979
Target:  5'- -uGGCC----UCCuGGAGGCCaGGGAa -3'
miRNA:   3'- cuCCGGuaguAGGuCCUCCGGgCCCU- -5'
28777 3' -61.4 NC_006146.1 + 146631 0.66 0.678214
Target:  5'- -cGGCCAggGUCac-GAGGCCUGGGu -3'
miRNA:   3'- cuCCGGUagUAGgucCUCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 33031 0.66 0.678214
Target:  5'- --uGCCGgc--CCGGGgcgGGGCCCGGGAc -3'
miRNA:   3'- cucCGGUaguaGGUCC---UCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 42581 0.66 0.678214
Target:  5'- aGGGCCAg----CAGGAccaGCCCGGGAa -3'
miRNA:   3'- cUCCGGUaguagGUCCUc--CGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 168235 0.66 0.668414
Target:  5'- aGGGGCCggCG-CCugcagGGGGGGCCggCGGGGc -3'
miRNA:   3'- -CUCCGGuaGUaGG-----UCCUCCGG--GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 167303 0.66 0.668414
Target:  5'- aGGGGCCggCG-CCugcagGGGGGGCCggCGGGGc -3'
miRNA:   3'- -CUCCGGuaGUaGG-----UCCUCCGG--GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 169167 0.66 0.668414
Target:  5'- aGGGGCCggCG-CCugcagGGGGGGCCggCGGGGc -3'
miRNA:   3'- -CUCCGGuaGUaGG-----UCCUCCGG--GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 51831 0.66 0.668414
Target:  5'- cGGGGCgG-CGUggaGGGGGGCUCGGGGc -3'
miRNA:   3'- -CUCCGgUaGUAgg-UCCUCCGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 118970 0.66 0.667433
Target:  5'- uGAGGCCAU-GUCUcacgguaAGGAGGagCUGGGGg -3'
miRNA:   3'- -CUCCGGUAgUAGG-------UCCUCCg-GGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 127055 0.66 0.658587
Target:  5'- aGAGGCCcUCGagCuGGcGGCgCGGGAa -3'
miRNA:   3'- -CUCCGGuAGUagGuCCuCCGgGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 102569 0.66 0.658587
Target:  5'- gGAGGCCGUCcucgacgccAUCCucucGcGGCCCGaGGAg -3'
miRNA:   3'- -CUCCGGUAG---------UAGGuc--CuCCGGGC-CCU- -5'
28777 3' -61.4 NC_006146.1 + 118419 0.67 0.64874
Target:  5'- -cGGCCGUCGUCCAGucccuggccGAGGUCCu--- -3'
miRNA:   3'- cuCCGGUAGUAGGUC---------CUCCGGGcccu -5'
28777 3' -61.4 NC_006146.1 + 43268 0.67 0.64874
Target:  5'- aGAGGCaCAgggCggCCuGGAGGUCCGGc- -3'
miRNA:   3'- -CUCCG-GUa--GuaGGuCCUCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 48340 0.67 0.638881
Target:  5'- uGGGCCAggCGUCCAGucuGGCCagCGGGc -3'
miRNA:   3'- cUCCGGUa-GUAGGUCcu-CCGG--GCCCu -5'
28777 3' -61.4 NC_006146.1 + 26296 0.67 0.638881
Target:  5'- aGGGGCCggCAUCU-GGAGGCgUGGa- -3'
miRNA:   3'- -CUCCGGuaGUAGGuCCUCCGgGCCcu -5'
28777 3' -61.4 NC_006146.1 + 150583 0.67 0.629017
Target:  5'- -uGGCCAUCGUCCAGcacccGCCUgcagGGGAu -3'
miRNA:   3'- cuCCGGUAGUAGGUCcuc--CGGG----CCCU- -5'
28777 3' -61.4 NC_006146.1 + 146766 0.67 0.629017
Target:  5'- aGAGGCCgaGUCAcgcgaCAGGuacAGGCCCGGu- -3'
miRNA:   3'- -CUCCGG--UAGUag---GUCC---UCCGGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 53448 0.67 0.629017
Target:  5'- aGGGCgGUgGUgucugcCCGGGAGGCgCGGGu -3'
miRNA:   3'- cUCCGgUAgUA------GGUCCUCCGgGCCCu -5'
28777 3' -61.4 NC_006146.1 + 90283 0.67 0.629017
Target:  5'- aGAGGCCGUgGUCgAGGAcgaggaaggGGCagaGGGGa -3'
miRNA:   3'- -CUCCGGUAgUAGgUCCU---------CCGgg-CCCU- -5'
28777 3' -61.4 NC_006146.1 + 170099 0.67 0.619155
Target:  5'- aGGGGCCGgcgCcgCagGGGGGGCCggCGGGGc -3'
miRNA:   3'- -CUCCGGUa--GuaGg-UCCUCCGG--GCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.