miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 5' -55.6 NC_006146.1 + 20722 0.68 0.850193
Target:  5'- aGCUGCuGG-CGgcCUGCgAGGACC-CGc -3'
miRNA:   3'- -CGACGuCCuGCaaGACG-UCCUGGaGC- -5'
28777 5' -55.6 NC_006146.1 + 45936 0.68 0.850193
Target:  5'- --aGguGGACGgggucucUCUG-GGGACCUCGa -3'
miRNA:   3'- cgaCguCCUGCa------AGACgUCCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 112114 0.68 0.842227
Target:  5'- gGgUGgAGGugGUgCUGguGGugGCCUCGg -3'
miRNA:   3'- -CgACgUCCugCAaGACguCC--UGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 46061 0.69 0.79971
Target:  5'- --cGCAGcGA-GUgccauagcugCUGCAGGGCCUCGg -3'
miRNA:   3'- cgaCGUC-CUgCAa---------GACGUCCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 36197 0.7 0.772337
Target:  5'- cCUGCAGGACGUUgUGUuguaacAGGAauaCUCc -3'
miRNA:   3'- cGACGUCCUGCAAgACG------UCCUg--GAGc -5'
28777 5' -55.6 NC_006146.1 + 95074 0.7 0.772337
Target:  5'- aGCUGCcccuGGugcAUGUcCcGCAGGGCCUCGa -3'
miRNA:   3'- -CGACGu---CC---UGCAaGaCGUCCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 115804 0.7 0.762953
Target:  5'- aGCUGaaCAGGAUGUUCUcCgagAGGAUCUCGu -3'
miRNA:   3'- -CGAC--GUCCUGCAAGAcG---UCCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 149825 0.7 0.753455
Target:  5'- gGCUcCGGGugGUgugggCgGcCAGGGCCUCGg -3'
miRNA:   3'- -CGAcGUCCugCAa----GaC-GUCCUGGAGC- -5'
28777 5' -55.6 NC_006146.1 + 21693 0.71 0.73415
Target:  5'- uGCUGCAGGggGCGgccaacaucCUGCAGuGCCUCu -3'
miRNA:   3'- -CGACGUCC--UGCaa-------GACGUCcUGGAGc -5'
28777 5' -55.6 NC_006146.1 + 123326 0.71 0.714495
Target:  5'- ---cCGGGACG-UCUGCGGGGCCgUCa -3'
miRNA:   3'- cgacGUCCUGCaAGACGUCCUGG-AGc -5'
28777 5' -55.6 NC_006146.1 + 18859 0.71 0.694561
Target:  5'- cGCUGCcgGGGugGUggacgUGCgGGGGCCUCa -3'
miRNA:   3'- -CGACG--UCCugCAag---ACG-UCCUGGAGc -5'
28777 5' -55.6 NC_006146.1 + 147566 0.72 0.664295
Target:  5'- cGCUG-AGGuCGgUCUGCAGGGCCa-- -3'
miRNA:   3'- -CGACgUCCuGCaAGACGUCCUGGagc -5'
28777 5' -55.6 NC_006146.1 + 155235 0.72 0.643975
Target:  5'- gGCUGUGGGucaGggCgUGCAGGugCUCGg -3'
miRNA:   3'- -CGACGUCCug-CaaG-ACGUCCugGAGC- -5'
28777 5' -55.6 NC_006146.1 + 49019 0.73 0.603286
Target:  5'- aGCcGCAGGGCGUUCUcCGGGGCg-CGg -3'
miRNA:   3'- -CGaCGUCCUGCAAGAcGUCCUGgaGC- -5'
28777 5' -55.6 NC_006146.1 + 71808 0.73 0.593149
Target:  5'- gGC-GCGGGACGUgcggaccuggCUGCGGGcCCUCc -3'
miRNA:   3'- -CGaCGUCCUGCAa---------GACGUCCuGGAGc -5'
28777 5' -55.6 NC_006146.1 + 132063 0.76 0.4569
Target:  5'- cGCUGCuGGACGUgagCUGCcccaggcucAGGGCCUgGc -3'
miRNA:   3'- -CGACGuCCUGCAa--GACG---------UCCUGGAgC- -5'
28777 5' -55.6 NC_006146.1 + 130814 0.78 0.346894
Target:  5'- aGCUGCAGcACGcgCUGCAGGcCCUCc -3'
miRNA:   3'- -CGACGUCcUGCaaGACGUCCuGGAGc -5'
28777 5' -55.6 NC_006146.1 + 123622 1.1 0.003003
Target:  5'- gGCUGCAGGACGUUCUGCAGGACCUCGu -3'
miRNA:   3'- -CGACGUCCUGCAAGACGUCCUGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.