miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 3' -55.4 NC_006146.1 + 144579 0.66 0.919285
Target:  5'- cGGGGC-UGGaCUCGGGGCga-GUGGACg -3'
miRNA:   3'- -UCUCGuACC-GGGUCUUGaggUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 141501 0.66 0.919285
Target:  5'- cGGGGC-UGGaCUCGGGGCga-GUGGACg -3'
miRNA:   3'- -UCUCGuACC-GGGUCUUGaggUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 14829 0.66 0.919285
Target:  5'- gAGGGCAcggucucgGGCCCGGGGCcgcgggaggCCGaggGGGCa -3'
miRNA:   3'- -UCUCGUa-------CCGGGUCUUGa--------GGUa--CCUG- -5'
28778 3' -55.4 NC_006146.1 + 92300 0.66 0.913449
Target:  5'- cGGGCccGGCCUGGGGCUgCugcugggGGGCg -3'
miRNA:   3'- uCUCGuaCCGGGUCUUGAgGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 92270 0.66 0.913449
Target:  5'- cGGGCccGGCCUGGGGCUgCugcugggGGGCg -3'
miRNA:   3'- uCUCGuaCCGGGUCUUGAgGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 92210 0.66 0.913449
Target:  5'- cGGGCccGGCCUGGGGCUgCugcugggGGGCg -3'
miRNA:   3'- uCUCGuaCCGGGUCUUGAgGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 92180 0.66 0.913449
Target:  5'- cGGGCccGGCCUGGGGCUgCugcugggGGGCg -3'
miRNA:   3'- uCUCGuaCCGGGUCUUGAgGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 150734 0.66 0.919285
Target:  5'- cGGGGC-UGGaCUCGGGGCga-GUGGACg -3'
miRNA:   3'- -UCUCGuACC-GGGUCUUGaggUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 118064 0.66 0.907369
Target:  5'- gGGGGCGgcggcGGCUCGGccCUCCGcauccUGGGCa -3'
miRNA:   3'- -UCUCGUa----CCGGGUCuuGAGGU-----ACCUG- -5'
28778 3' -55.4 NC_006146.1 + 92150 0.66 0.913449
Target:  5'- cGGGCccGGCCUGGGGCUgCugcugggGGGCg -3'
miRNA:   3'- uCUCGuaCCGGGUCUUGAgGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 92031 0.66 0.913449
Target:  5'- cGGGCccGGCCUGGGGCUgCugcugggGGGCg -3'
miRNA:   3'- uCUCGuaCCGGGUCUUGAgGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 92120 0.66 0.913449
Target:  5'- cGGGCccGGCCUGGGGCUgCugcugggGGGCg -3'
miRNA:   3'- uCUCGuaCCGGGUCUUGAgGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 146851 0.67 0.886315
Target:  5'- cGGGCcUGGCUCGGGGCcgcgucaccccgCCAgggGGACg -3'
miRNA:   3'- uCUCGuACCGGGUCUUGa-----------GGUa--CCUG- -5'
28778 3' -55.4 NC_006146.1 + 144232 0.67 0.893824
Target:  5'- -uAGCAUGGCUguGAGguuuguuCUCCA-GGGCu -3'
miRNA:   3'- ucUCGUACCGGguCUU-------GAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 93694 0.67 0.894493
Target:  5'- uGGAgGCAUaGUCCAGGAggCCGUGGAg -3'
miRNA:   3'- -UCU-CGUAcCGGGUCUUgaGGUACCUg -5'
28778 3' -55.4 NC_006146.1 + 101602 0.67 0.865202
Target:  5'- gAGAGUAcugGGcCCCAGAAC-CCucuuuagGUGGGCc -3'
miRNA:   3'- -UCUCGUa--CC-GGGUCUUGaGG-------UACCUG- -5'
28778 3' -55.4 NC_006146.1 + 151688 0.67 0.86596
Target:  5'- gAGGGCGgcgccuuggGGCCCGGAGuCUCgGaGGAUc -3'
miRNA:   3'- -UCUCGUa--------CCGGGUCUU-GAGgUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 147338 0.67 0.868974
Target:  5'- --cGCAUGGCCUgagucccuacuuuuaGGGGCUCC-UGGGg -3'
miRNA:   3'- ucuCGUACCGGG---------------UCUUGAGGuACCUg -5'
28778 3' -55.4 NC_006146.1 + 150416 0.67 0.868974
Target:  5'- --cGCAUGGCCUgagucccuacuuuuaGGGGCUCC-UGGGg -3'
miRNA:   3'- ucuCGUACCGGG---------------UCUUGAGGuACCUg -5'
28778 3' -55.4 NC_006146.1 + 153494 0.67 0.868974
Target:  5'- --cGCAUGGCCUgagucccuacuuuuaGGGGCUCC-UGGGg -3'
miRNA:   3'- ucuCGUACCGGG---------------UCUUGAGGuACCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.