miRNA display CGI


Results 21 - 40 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28779 3' -62.9 NC_006146.1 + 35268 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 35175 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 34989 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 34432 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 34618 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 34711 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 34804 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 34897 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 35082 0.66 0.691232
Target:  5'- cCCCCGG-CccCGAGCUccaggaCCGGGCaGCg- -3'
miRNA:   3'- -GGGGCCuGcuGCUCGA------GGCCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 138811 0.66 0.681775
Target:  5'- gCCCGGGguUGGUGAGCUaUUGGGCGCc- -3'
miRNA:   3'- gGGGCCU--GCUGCUCGA-GGCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 124978 0.66 0.681775
Target:  5'- aCCCCGuccaccuACGGCacGGUcaccggCCGGGCGCUGa -3'
miRNA:   3'- -GGGGCc------UGCUGc-UCGa-----GGCCCGCGAC- -5'
28779 3' -62.9 NC_006146.1 + 42253 0.66 0.680827
Target:  5'- cCUCCGGcGCGAgGAGCUggcucagCUGGGCGaCa- -3'
miRNA:   3'- -GGGGCC-UGCUgCUCGA-------GGCCCGC-Gac -5'
28779 3' -62.9 NC_006146.1 + 113618 0.66 0.672281
Target:  5'- cUCCUGGGggaccgucagcuUGACGGuGCUCCGGGggauggccuUGCUGa -3'
miRNA:   3'- -GGGGCCU------------GCUGCU-CGAGGCCC---------GCGAC- -5'
28779 3' -62.9 NC_006146.1 + 43199 0.66 0.672281
Target:  5'- cCUCgCGGGaGGCGGGgaUgGGGCGCUGc -3'
miRNA:   3'- -GGG-GCCUgCUGCUCgaGgCCCGCGAC- -5'
28779 3' -62.9 NC_006146.1 + 101669 0.66 0.672281
Target:  5'- gCCCUGGGgGgaaACGGGCUaCGGGCGg-- -3'
miRNA:   3'- -GGGGCCUgC---UGCUCGAgGCCCGCgac -5'
28779 3' -62.9 NC_006146.1 + 8522 0.66 0.672281
Target:  5'- gUCCCGGGCG-CGGGCgcgCCaaGGG-GCUc -3'
miRNA:   3'- -GGGGCCUGCuGCUCGa--GG--CCCgCGAc -5'
28779 3' -62.9 NC_006146.1 + 55761 0.66 0.672281
Target:  5'- gCCCGG-CGGCGGGC-CagGGGCaGCg- -3'
miRNA:   3'- gGGGCCuGCUGCUCGaGg-CCCG-CGac -5'
28779 3' -62.9 NC_006146.1 + 93589 0.66 0.672281
Target:  5'- gCCUGGGCaugcgcgacccGcCGGGCUCCugGGGCuGCUGu -3'
miRNA:   3'- gGGGCCUG-----------CuGCUCGAGG--CCCG-CGAC- -5'
28779 3' -62.9 NC_006146.1 + 166252 0.66 0.67133
Target:  5'- gCCCaGGACGGCGGgguauauGUUCUGGGCccGCa- -3'
miRNA:   3'- gGGG-CCUGCUGCU-------CGAGGCCCG--CGac -5'
28779 3' -62.9 NC_006146.1 + 57320 0.66 0.66276
Target:  5'- aCCUGGACG-CGuGGCUCUcuGGGgGCg- -3'
miRNA:   3'- gGGGCCUGCuGC-UCGAGG--CCCgCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.