miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28779 5' -56.9 NC_006146.1 + 75597 0.66 0.874129
Target:  5'- cUCCGCGCCUAcugCCccaCCGUCUACa -3'
miRNA:   3'- aAGGUGCGGGUucaGGa--GGUAGGUGc -5'
28779 5' -56.9 NC_006146.1 + 56549 0.66 0.874129
Target:  5'- -gUCACGCgggCCAGGcCC-CCGUCCACc -3'
miRNA:   3'- aaGGUGCG---GGUUCaGGaGGUAGGUGc -5'
28779 5' -56.9 NC_006146.1 + 162392 0.66 0.874129
Target:  5'- -cCCGCGCCCGGGaCC-CCGgugggCCAgGa -3'
miRNA:   3'- aaGGUGCGGGUUCaGGaGGUa----GGUgC- -5'
28779 5' -56.9 NC_006146.1 + 378 0.66 0.874129
Target:  5'- -gCCGCGCCCccucAGGcCCcgCCcgCCGCGc -3'
miRNA:   3'- aaGGUGCGGG----UUCaGGa-GGuaGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 76789 0.66 0.869762
Target:  5'- cUUCCugGCCCGgcucaucuacgggggGGUcuacgCCUUCAgCCACGg -3'
miRNA:   3'- -AAGGugCGGGU---------------UCA-----GGAGGUaGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 71272 0.66 0.866809
Target:  5'- cUCUACGCCU---UCCUCCGgagcaUCUACGc -3'
miRNA:   3'- aAGGUGCGGGuucAGGAGGU-----AGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 123467 0.66 0.859281
Target:  5'- -gUCAggUGCCCcAGcUCCUCCAUCCuaACGg -3'
miRNA:   3'- aaGGU--GCGGGuUC-AGGAGGUAGG--UGC- -5'
28779 5' -56.9 NC_006146.1 + 113596 0.66 0.859281
Target:  5'- --aCGCGUCCAGGUCCacaaaggCC-UCCugGg -3'
miRNA:   3'- aagGUGCGGGUUCAGGa------GGuAGGugC- -5'
28779 5' -56.9 NC_006146.1 + 118434 0.67 0.85155
Target:  5'- -cCCugGCCgAGGUCCUgCA-CgGCGg -3'
miRNA:   3'- aaGGugCGGgUUCAGGAgGUaGgUGC- -5'
28779 5' -56.9 NC_006146.1 + 129845 0.67 0.835505
Target:  5'- cUCCAC-CCCGAGgCCcCCAgggccgCCGCGg -3'
miRNA:   3'- aAGGUGcGGGUUCaGGaGGUa-----GGUGC- -5'
28779 5' -56.9 NC_006146.1 + 82120 0.67 0.834683
Target:  5'- cUCCACGCCCuguagcacaugggGAGUCUcagCCucagCCACa -3'
miRNA:   3'- aAGGUGCGGG-------------UUCAGGa--GGua--GGUGc -5'
28779 5' -56.9 NC_006146.1 + 48672 0.67 0.830547
Target:  5'- aUCCugGCCCAugcuucgccGG-CCUCCcucgcccgccgcuccGUCCGCu -3'
miRNA:   3'- aAGGugCGGGU---------UCaGGAGG---------------UAGGUGc -5'
28779 5' -56.9 NC_006146.1 + 141074 0.67 0.827205
Target:  5'- -cCCugGCUCAAGUUCUCauuUCCAa- -3'
miRNA:   3'- aaGGugCGGGUUCAGGAGgu-AGGUgc -5'
28779 5' -56.9 NC_006146.1 + 114592 0.67 0.827205
Target:  5'- gUCCACGCUCAcuUCgUCCAg-CACGg -3'
miRNA:   3'- aAGGUGCGGGUucAGgAGGUagGUGC- -5'
28779 5' -56.9 NC_006146.1 + 48752 0.67 0.827205
Target:  5'- cUCCuuGCGCCCGg--CCUCCAgcagCCGCc -3'
miRNA:   3'- aAGG--UGCGGGUucaGGAGGUa---GGUGc -5'
28779 5' -56.9 NC_006146.1 + 3920 0.67 0.827205
Target:  5'- -aCCGCGCCCAGccacugccccGUCCUCUAuuUCCcCu -3'
miRNA:   3'- aaGGUGCGGGUU----------CAGGAGGU--AGGuGc -5'
28779 5' -56.9 NC_006146.1 + 78296 0.67 0.81873
Target:  5'- cUCCucugucuCGCUCAGGUCUUCCuccucaucuucAUCCugGg -3'
miRNA:   3'- aAGGu------GCGGGUUCAGGAGG-----------UAGGugC- -5'
28779 5' -56.9 NC_006146.1 + 49565 0.68 0.810087
Target:  5'- -gCCAgGCCCAGcauggccucgauGUCCUCCAggaugaCGCGg -3'
miRNA:   3'- aaGGUgCGGGUU------------CAGGAGGUag----GUGC- -5'
28779 5' -56.9 NC_006146.1 + 95711 0.68 0.801285
Target:  5'- -cCUACGUCCAGGgCCagaCCAUCUACGc -3'
miRNA:   3'- aaGGUGCGGGUUCaGGa--GGUAGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 129622 0.68 0.801285
Target:  5'- cUCCGuCG-CCGGGUCCUCCGcgggcgcgugcUCCGCc -3'
miRNA:   3'- aAGGU-GCgGGUUCAGGAGGU-----------AGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.