miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2878 3' -48.4 NC_001493.1 + 26797 0.67 0.996243
Target:  5'- uGCUcGUCGAGCACCAG--UCgcuugGggGCc -3'
miRNA:   3'- uUGA-CAGCUUGUGGUCcaAGa----CuuUG- -5'
2878 3' -48.4 NC_001493.1 + 133118 0.67 0.995569
Target:  5'- --aUGUUGAGCGCuauCAGGccgaUCUGGAACa -3'
miRNA:   3'- uugACAGCUUGUG---GUCCa---AGACUUUG- -5'
2878 3' -48.4 NC_001493.1 + 130328 0.67 0.995569
Target:  5'- --aUGgggCGGAcCGCCGGGUUCUGGc-- -3'
miRNA:   3'- uugACa--GCUU-GUGGUCCAAGACUuug -5'
2878 3' -48.4 NC_001493.1 + 17564 0.67 0.995569
Target:  5'- --aUGUUGAGCGCuauCAGGccgaUCUGGAACa -3'
miRNA:   3'- uugACAGCUUGUG---GUCCa---AGACUUUG- -5'
2878 3' -48.4 NC_001493.1 + 14774 0.67 0.995569
Target:  5'- --aUGgggCGGAcCGCCGGGUUCUGGc-- -3'
miRNA:   3'- uugACa--GCUU-GUGGUCCAAGACUuug -5'
2878 3' -48.4 NC_001493.1 + 44668 0.67 0.995348
Target:  5'- cGCUGggucGCACCGGGUUCUaucgacaccucacgGAGACg -3'
miRNA:   3'- uUGACagcuUGUGGUCCAAGA--------------CUUUG- -5'
2878 3' -48.4 NC_001493.1 + 36170 0.68 0.991823
Target:  5'- -cCUGUgGAGCGagGGGUUCgGGAACg -3'
miRNA:   3'- uuGACAgCUUGUggUCCAAGaCUUUG- -5'
2878 3' -48.4 NC_001493.1 + 31135 0.69 0.981953
Target:  5'- cGACUGgaGAAUcuCCAGGUgggUCUGAAACa -3'
miRNA:   3'- -UUGACagCUUGu-GGUCCA---AGACUUUG- -5'
2878 3' -48.4 NC_001493.1 + 29676 0.72 0.928505
Target:  5'- gGugUGUCGAcaGCCAGGguccgcgagCUGGAGCa -3'
miRNA:   3'- -UugACAGCUugUGGUCCaa-------GACUUUG- -5'
2878 3' -48.4 NC_001493.1 + 124720 1.09 0.012216
Target:  5'- uAACUGUCGAACACCAGGUUCUGAAACg -3'
miRNA:   3'- -UUGACAGCUUGUGGUCCAAGACUUUG- -5'
2878 3' -48.4 NC_001493.1 + 9166 1.09 0.012216
Target:  5'- uAACUGUCGAACACCAGGUUCUGAAACg -3'
miRNA:   3'- -UUGACAGCUUGUGGUCCAAGACUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.