miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28780 3' -62.5 NC_006146.1 + 21036 0.67 0.574203
Target:  5'- cCAGGCCCUCCgAGgCCCCag--GCCu- -3'
miRNA:   3'- -GUCCGGGAGG-UCaGGGGccuaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 21108 0.68 0.470231
Target:  5'- -uGGCCC-CCAucUCCCUGGAgGCCGAg -3'
miRNA:   3'- guCCGGGaGGUc-AGGGGCCUaCGGUU- -5'
28780 3' -62.5 NC_006146.1 + 21595 0.74 0.219687
Target:  5'- uCAGGCCCUCCGcGUCCCCGuccuCCAGa -3'
miRNA:   3'- -GUCCGGGAGGU-CAGGGGCcuacGGUU- -5'
28780 3' -62.5 NC_006146.1 + 22835 0.72 0.308029
Target:  5'- aGGGCCCUCCAGUCcagacccagagacgCCCaGGAgGCCc- -3'
miRNA:   3'- gUCCGGGAGGUCAG--------------GGG-CCUaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 23074 0.68 0.479318
Target:  5'- uCAGGCCggCCGGagggaCCCCGGcgGCCc- -3'
miRNA:   3'- -GUCCGGgaGGUCa----GGGGCCuaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 23291 0.7 0.384682
Target:  5'- cCAGGCCCUCC-GUCCUCccugGCCAc -3'
miRNA:   3'- -GUCCGGGAGGuCAGGGGccuaCGGUu -5'
28780 3' -62.5 NC_006146.1 + 24114 0.67 0.574203
Target:  5'- cCAGGCCCUCCgAGgCCCCag--GCCu- -3'
miRNA:   3'- -GUCCGGGAGG-UCaGGGGccuaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 24673 0.74 0.219687
Target:  5'- uCAGGCCCUCCGcGUCCCCGuccuCCAGa -3'
miRNA:   3'- -GUCCGGGAGGU-CAGGGGCcuacGGUU- -5'
28780 3' -62.5 NC_006146.1 + 25913 0.71 0.351198
Target:  5'- aGGGCCCUCCAGUCcagacccagagacgCCCaGGA-GCCc- -3'
miRNA:   3'- gUCCGGGAGGUCAG--------------GGG-CCUaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 26152 0.68 0.479318
Target:  5'- uCAGGCCggCCGGagggaCCCCGGcgGCCc- -3'
miRNA:   3'- -GUCCGGgaGGUCa----GGGGCCuaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 26369 0.7 0.384682
Target:  5'- cCAGGCCCUCC-GUCCUCccugGCCAc -3'
miRNA:   3'- -GUCCGGGAGGuCAGGGGccuaCGGUu -5'
28780 3' -62.5 NC_006146.1 + 27192 0.67 0.574203
Target:  5'- cCAGGCCCUCCgAGgCCCCag--GCCu- -3'
miRNA:   3'- -GUCCGGGAGG-UCaGGGGccuaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 27751 0.74 0.219687
Target:  5'- uCAGGCCCUCCGcGUCCCCGuccuCCAGa -3'
miRNA:   3'- -GUCCGGGAGGU-CAGGGGCcuacGGUU- -5'
28780 3' -62.5 NC_006146.1 + 28990 0.72 0.308029
Target:  5'- aGGGCCCUCCAGUCcagacccagagacgCCCaGGAgGCCc- -3'
miRNA:   3'- gUCCGGGAGGUCAG--------------GGG-CCUaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 29230 0.68 0.479318
Target:  5'- uCAGGCCggCCGGagggaCCCCGGcgGCCc- -3'
miRNA:   3'- -GUCCGGgaGGUCa----GGGGCCuaCGGuu -5'
28780 3' -62.5 NC_006146.1 + 29447 0.7 0.384682
Target:  5'- cCAGGCCCUCC-GUCCUCccugGCCAc -3'
miRNA:   3'- -GUCCGGGAGGuCAGGGGccuaCGGUu -5'
28780 3' -62.5 NC_006146.1 + 33681 0.7 0.40096
Target:  5'- cCAGGCCCccacCCGGcuuccUCCCCGGGgugUGCCc- -3'
miRNA:   3'- -GUCCGGGa---GGUC-----AGGGGCCU---ACGGuu -5'
28780 3' -62.5 NC_006146.1 + 33868 0.7 0.40096
Target:  5'- cCAGGCCCccacCCGGccuccUCCCCGGGgugUGCCc- -3'
miRNA:   3'- -GUCCGGGa---GGUC-----AGGGGCCU---ACGGuu -5'
28780 3' -62.5 NC_006146.1 + 41802 0.68 0.479318
Target:  5'- uCAGGCCCUcugCCGGUUUcugcacgacaggCCGGAUGUCGc -3'
miRNA:   3'- -GUCCGGGA---GGUCAGG------------GGCCUACGGUu -5'
28780 3' -62.5 NC_006146.1 + 44102 0.69 0.409262
Target:  5'- -cGGaaaCCUCCAGgCCCCGGcUGCCc- -3'
miRNA:   3'- guCCg--GGAGGUCaGGGGCCuACGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.