miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28780 5' -57.8 NC_006146.1 + 150462 0.67 0.804117
Target:  5'- ---gGACAgGGG-CUGGAugacaguGGCCCCCUg -3'
miRNA:   3'- ccagUUGUgCCUaGACCU-------CCGGGGGA- -5'
28780 5' -57.8 NC_006146.1 + 121474 0.68 0.787373
Target:  5'- cGcCAACGcCGGGUCcaucgUGGGGGCCgCCa -3'
miRNA:   3'- cCaGUUGU-GCCUAG-----ACCUCCGGgGGa -5'
28780 5' -57.8 NC_006146.1 + 130960 0.68 0.787373
Target:  5'- uGUCAuCA-GGGUCaGGAGGCgCCCa -3'
miRNA:   3'- cCAGUuGUgCCUAGaCCUCCGgGGGa -5'
28780 5' -57.8 NC_006146.1 + 52980 0.68 0.787373
Target:  5'- cGGggCGGgGCGGGcgUCUcGAGGCCCCUc -3'
miRNA:   3'- -CCa-GUUgUGCCU--AGAcCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 118027 0.68 0.787373
Target:  5'- gGGgcgcgCGAggacCACGGAcCUGGA-GCCCCCg -3'
miRNA:   3'- -CCa----GUU----GUGCCUaGACCUcCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 14521 0.68 0.787373
Target:  5'- --aCAGCAUGGggCUGGAGaGCCuggaccgggCCCUg -3'
miRNA:   3'- ccaGUUGUGCCuaGACCUC-CGG---------GGGA- -5'
28780 5' -57.8 NC_006146.1 + 62286 0.68 0.784684
Target:  5'- gGGUCAGCugGGAaaguugUUGGGugaaagcuaucuccGGCuCCCCg -3'
miRNA:   3'- -CCAGUUGugCCUa-----GACCU--------------CCG-GGGGa -5'
28780 5' -57.8 NC_006146.1 + 129945 0.68 0.778364
Target:  5'- cGGUCuacGGCACGGAcCUGGgguGGGUCCUg- -3'
miRNA:   3'- -CCAG---UUGUGCCUaGACC---UCCGGGGga -5'
28780 5' -57.8 NC_006146.1 + 22124 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 19046 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 12891 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 25202 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 28280 0.68 0.778364
Target:  5'- gGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 104000 0.68 0.772898
Target:  5'- cGGUCuGCAaccugguccUGGAUCUGGAucucaagacccggggGGCgCCCUg -3'
miRNA:   3'- -CCAGuUGU---------GCCUAGACCU---------------CCGgGGGA- -5'
28780 5' -57.8 NC_006146.1 + 100894 0.68 0.76923
Target:  5'- uGUCGGCcUGGGUCUcGGccgugGGGUCCCCg -3'
miRNA:   3'- cCAGUUGuGCCUAGA-CC-----UCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 3709 0.68 0.76923
Target:  5'- uGGUCAgacacacagACAgGGucUCUGGGGGCCgcguggCCCUu -3'
miRNA:   3'- -CCAGU---------UGUgCCu-AGACCUCCGG------GGGA- -5'
28780 5' -57.8 NC_006146.1 + 152015 0.68 0.759979
Target:  5'- cGGUagaAGCACagugGGggCU-GAGGCCCCCg -3'
miRNA:   3'- -CCAg--UUGUG----CCuaGAcCUCCGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 122390 0.68 0.759979
Target:  5'- cGGcCAggaACGCGGAggugCUGGAGaCCCUCa -3'
miRNA:   3'- -CCaGU---UGUGCCUa---GACCUCcGGGGGa -5'
28780 5' -57.8 NC_006146.1 + 15968 0.68 0.75062
Target:  5'- cGGUCu---CGGGUCUGGGGGUCUgUg -3'
miRNA:   3'- -CCAGuuguGCCUAGACCUCCGGGgGa -5'
28780 5' -57.8 NC_006146.1 + 157306 0.69 0.731613
Target:  5'- gGGUCugGACugGaGGgccCUgGGAGGCCCCUg -3'
miRNA:   3'- -CCAG--UUGugC-CUa--GA-CCUCCGGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.