miRNA display CGI


Results 21 - 40 of 321 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28782 5' -54.1 NC_006146.1 + 34481 0.66 0.97335
Target:  5'- gCCaCCCCCcGCc-GGAGCgggGcAGCGGa -3'
miRNA:   3'- -GGcGGGGGuUGuuUCUCGa--CuUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 35503 0.66 0.97335
Target:  5'- gCCaCCCCCcGCc-GGAGCgggGcAGCGGa -3'
miRNA:   3'- -GGcGGGGGuUGuuUCUCGa--CuUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 35410 0.66 0.97335
Target:  5'- gCCaCCCCCcGCc-GGAGCgggGcAGCGGa -3'
miRNA:   3'- -GGcGGGGGuUGuuUCUCGa--CuUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 35317 0.66 0.97335
Target:  5'- gCCaCCCCCcGCc-GGAGCgggGcAGCGGa -3'
miRNA:   3'- -GGcGGGGGuUGuuUCUCGa--CuUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 35224 0.66 0.97335
Target:  5'- gCCaCCCCCcGCc-GGAGCgggGcAGCGGa -3'
miRNA:   3'- -GGcGGGGGuUGuuUCUCGa--CuUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 35038 0.66 0.97335
Target:  5'- gCCaCCCCCcGCc-GGAGCgggGcAGCGGa -3'
miRNA:   3'- -GGcGGGGGuUGuuUCUCGa--CuUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 34945 0.66 0.97335
Target:  5'- gCCaCCCCCcGCc-GGAGCgggGcAGCGGa -3'
miRNA:   3'- -GGcGGGGGuUGuuUCUCGa--CuUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 34853 0.66 0.97335
Target:  5'- gCCaCCCCCcGCc-GGAGCgggGcAGCGGa -3'
miRNA:   3'- -GGcGGGGGuUGuuUCUCGa--CuUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 34760 0.66 0.97335
Target:  5'- gCCaCCCCCcGCc-GGAGCgggGcAGCGGa -3'
miRNA:   3'- -GGcGGGGGuUGuuUCUCGa--CuUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 34667 0.66 0.97335
Target:  5'- gCCaCCCCCcGCc-GGAGCgggGcAGCGGa -3'
miRNA:   3'- -GGcGGGGGuUGuuUCUCGa--CuUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 34574 0.66 0.97335
Target:  5'- gCCaCCCCCcGCc-GGAGCgggGcAGCGGa -3'
miRNA:   3'- -GGcGGGGGuUGuuUCUCGa--CuUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 114185 0.66 0.973081
Target:  5'- uCgGCCCCCugagaaauauuuaGACGccGGGCcGGAGgGGg -3'
miRNA:   3'- -GgCGGGGG-------------UUGUuuCUCGaCUUCgCC- -5'
28782 5' -54.1 NC_006146.1 + 117225 0.66 0.973081
Target:  5'- gCUGCCCCCGggcuuccuggaaaGCGGccGGGGCcaggGggGuCGGc -3'
miRNA:   3'- -GGCGGGGGU-------------UGUU--UCUCGa---CuuC-GCC- -5'
28782 5' -54.1 NC_006146.1 + 154554 0.66 0.971706
Target:  5'- gCGUgCCgGACGAGggacauuggauguccGAGgaGAAGCGGa -3'
miRNA:   3'- gGCGgGGgUUGUUU---------------CUCgaCUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 92138 0.66 0.970571
Target:  5'- gCUGCUggggggcgggCCCGGCcuGGGGCUGcugcugggGGGCGGg -3'
miRNA:   3'- -GGCGG----------GGGUUGuuUCUCGAC--------UUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 92019 0.66 0.970571
Target:  5'- gCUGCUggggggcgggCCCGGCcuGGGGCUGcugcugggGGGCGGg -3'
miRNA:   3'- -GGCGG----------GGGUUGuuUCUCGAC--------UUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 92198 0.66 0.970571
Target:  5'- gCUGCUggggggcgggCCCGGCcuGGGGCUGcugcugggGGGCGGg -3'
miRNA:   3'- -GGCGG----------GGGUUGuuUCUCGAC--------UUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 92258 0.66 0.970571
Target:  5'- gCUGCUggggggcgggCCCGGCcuGGGGCUGcugcugggGGGCGGg -3'
miRNA:   3'- -GGCGG----------GGGUUGuuUCUCGAC--------UUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 41142 0.66 0.970571
Target:  5'- gCGCUCCCuggaggGACGAggacuggucGGGGUcgGAGGCGGc -3'
miRNA:   3'- gGCGGGGG------UUGUU---------UCUCGa-CUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 70926 0.66 0.970571
Target:  5'- aCCGCCCagCGGCucAGGGGGCuuugagacagaUGAuGCGGa -3'
miRNA:   3'- -GGCGGGg-GUUG--UUUCUCG-----------ACUuCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.