miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28783 3' -60.4 NC_006146.1 + 42711 0.67 0.720486
Target:  5'- gCGCCGcggcGCCCCCCUGggccgccuCCCGGcgUCGc -3'
miRNA:   3'- -GCGGUau--CGGGGGGAC--------GGGCUcaAGC- -5'
28783 3' -60.4 NC_006146.1 + 99900 0.67 0.705137
Target:  5'- gCGCCucuGCCCCCCgggcgcaagagcggGCuCCGGG-UCGc -3'
miRNA:   3'- -GCGGuauCGGGGGGa-------------CG-GGCUCaAGC- -5'
28783 3' -60.4 NC_006146.1 + 169460 0.67 0.701275
Target:  5'- gGCCG-GGCCuCCCCUggggGCCuCGGGggCGg -3'
miRNA:   3'- gCGGUaUCGG-GGGGA----CGG-GCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 168528 0.67 0.701275
Target:  5'- gGCCG-GGCCuCCCCUggggGCCuCGGGggCGg -3'
miRNA:   3'- gCGGUaUCGG-GGGGA----CGG-GCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 167596 0.67 0.701275
Target:  5'- gGCCG-GGCCuCCCCUggggGCCuCGGGggCGg -3'
miRNA:   3'- gCGGUaUCGG-GGGGA----CGG-GCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 130419 0.67 0.701275
Target:  5'- uGCCuuucgcGGCCCCUCUGCCCcccUUCa -3'
miRNA:   3'- gCGGua----UCGGGGGGACGGGcucAAGc -5'
28783 3' -60.4 NC_006146.1 + 124729 0.67 0.701275
Target:  5'- gGCCGcucucUGGCCCCa---CCCGAGUUCc -3'
miRNA:   3'- gCGGU-----AUCGGGGggacGGGCUCAAGc -5'
28783 3' -60.4 NC_006146.1 + 170391 0.67 0.701275
Target:  5'- gGCCG-GGCCuCCCCUggggGCCuCGGGggCGg -3'
miRNA:   3'- gCGGUaUCGG-GGGGA----CGG-GCUCaaGC- -5'
28783 3' -60.4 NC_006146.1 + 159400 0.67 0.671095
Target:  5'- gCGCUGUccacgaucaugacGGCCCCCgaGUCCGGGUggcugauggUCGa -3'
miRNA:   3'- -GCGGUA-------------UCGGGGGgaCGGGCUCA---------AGC- -5'
28783 3' -60.4 NC_006146.1 + 33057 0.68 0.660306
Target:  5'- aCGCCcacccaccccgAGCCCCCCUGCCUuccaGGUgcacCGg -3'
miRNA:   3'- -GCGGua---------UCGGGGGGACGGGc---UCAa---GC- -5'
28783 3' -60.4 NC_006146.1 + 42421 0.68 0.642601
Target:  5'- cCGCCGUGGgCCCCCUGgCCuacaAGUg-- -3'
miRNA:   3'- -GCGGUAUCgGGGGGACgGGc---UCAagc -5'
28783 3' -60.4 NC_006146.1 + 130164 0.68 0.640632
Target:  5'- gGCCAgccccaagcacgGGCCCgCCUGCCCGGa---- -3'
miRNA:   3'- gCGGUa-----------UCGGGgGGACGGGCUcaagc -5'
28783 3' -60.4 NC_006146.1 + 129052 0.68 0.632752
Target:  5'- gGCCccgGUAGCCCCuggCCacgGCCCGGGUg-- -3'
miRNA:   3'- gCGG---UAUCGGGG---GGa--CGGGCUCAagc -5'
28783 3' -60.4 NC_006146.1 + 109899 0.68 0.632752
Target:  5'- gGCCGUGGCCUCCagaaaCUGCCUGAu---- -3'
miRNA:   3'- gCGGUAUCGGGGG-----GACGGGCUcaagc -5'
28783 3' -60.4 NC_006146.1 + 103522 0.68 0.622902
Target:  5'- cCGCaCcgAGCCCCCCUcCCCGuacUCGu -3'
miRNA:   3'- -GCG-GuaUCGGGGGGAcGGGCucaAGC- -5'
28783 3' -60.4 NC_006146.1 + 89046 0.68 0.622902
Target:  5'- gGCCGaGGCUCCCaguaGCCCGGGUaUGg -3'
miRNA:   3'- gCGGUaUCGGGGGga--CGGGCUCAaGC- -5'
28783 3' -60.4 NC_006146.1 + 47254 0.68 0.613059
Target:  5'- uCGaCGUGGCCCCUg-GCCCGGGUgaCGa -3'
miRNA:   3'- -GCgGUAUCGGGGGgaCGGGCUCAa-GC- -5'
28783 3' -60.4 NC_006146.1 + 3738 0.68 0.613059
Target:  5'- gGCCgcGUGGCCCUUCaGCCCGGGg--- -3'
miRNA:   3'- gCGG--UAUCGGGGGGaCGGGCUCaagc -5'
28783 3' -60.4 NC_006146.1 + 131870 0.68 0.613059
Target:  5'- uGCCugcUGGCCCCCaUGUuuGGGUUgCGa -3'
miRNA:   3'- gCGGu--AUCGGGGGgACGggCUCAA-GC- -5'
28783 3' -60.4 NC_006146.1 + 119063 0.68 0.612075
Target:  5'- gGCCAggccccgAGCCCCCCUccacgccGCcCCGGGgaaCGg -3'
miRNA:   3'- gCGGUa------UCGGGGGGA-------CG-GGCUCaa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.