miRNA display CGI


Results 21 - 40 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28783 5' -49.8 NC_006146.1 + 44526 0.66 0.998341
Target:  5'- gGUgGGAuccauGGCAGGAuauccuggaaaaGGGGC-CGGGGCu -3'
miRNA:   3'- -CGgCUUu----UCGUCUU------------UCUCGaGCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 123341 0.66 0.998341
Target:  5'- gGCCGucAGGGGUcucgccGAGGGAGCUCu-GGCg -3'
miRNA:   3'- -CGGC--UUUUCGu-----CUUUCUCGAGcuCCG- -5'
28783 5' -49.8 NC_006146.1 + 59324 0.66 0.998341
Target:  5'- gGCCGAGAGGCuGgcGGuGUU-GAcGGCa -3'
miRNA:   3'- -CGGCUUUUCGuCuuUCuCGAgCU-CCG- -5'
28783 5' -49.8 NC_006146.1 + 88134 0.66 0.998341
Target:  5'- uGUCGGAAuggGGCGcaAAGGGGCUucaCGAGGUg -3'
miRNA:   3'- -CGGCUUU---UCGUc-UUUCUCGA---GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 112750 0.66 0.99831
Target:  5'- gGUCGAGgcGCAGAAgccggccAGGGCauguaaaaaUGAGGCa -3'
miRNA:   3'- -CGGCUUuuCGUCUU-------UCUCGa--------GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 153506 0.66 0.99831
Target:  5'- uGCCGugcuucuGGAGGCuguGGAuGGAGUggGGGGCg -3'
miRNA:   3'- -CGGC-------UUUUCG---UCUuUCUCGagCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 76892 0.66 0.998279
Target:  5'- uGCCGGGccGCAcGugGGAGCcagaggugaccgCGGGGCu -3'
miRNA:   3'- -CGGCUUuuCGU-CuuUCUCGa-----------GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 126795 0.66 0.99801
Target:  5'- cGCCG---GGCAGccGGGGCcUgGAGGUu -3'
miRNA:   3'- -CGGCuuuUCGUCuuUCUCG-AgCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 153389 0.66 0.99801
Target:  5'- gGCCGGAuuguugAGGguGccaAGGGAGUUCccgGGGGCg -3'
miRNA:   3'- -CGGCUU------UUCguC---UUUCUCGAG---CUCCG- -5'
28783 5' -49.8 NC_006146.1 + 166867 0.66 0.99801
Target:  5'- cCCGGcgGGaGGggGGAGCggagggCGAGGa -3'
miRNA:   3'- cGGCUuuUCgUCuuUCUCGa-----GCUCCg -5'
28783 5' -49.8 NC_006146.1 + 166573 0.66 0.99801
Target:  5'- aGCCGAAAGuguuauGCAGAuguGugcacuGCUCagaGAGGCu -3'
miRNA:   3'- -CGGCUUUU------CGUCUuu-Cu-----CGAG---CUCCG- -5'
28783 5' -49.8 NC_006146.1 + 170646 0.66 0.99801
Target:  5'- gGCCGcAAGuAGCAGAgugaGAGAGCa--AGGCc -3'
miRNA:   3'- -CGGC-UUU-UCGUCU----UUCUCGagcUCCG- -5'
28783 5' -49.8 NC_006146.1 + 15993 0.66 0.99801
Target:  5'- -gCGAAGGGCGGAcgcGGucAGCccgggCGAGGCc -3'
miRNA:   3'- cgGCUUUUCGUCUu--UC--UCGa----GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 117821 0.66 0.99801
Target:  5'- -aCGGAGGGgAGGAGGAGg-CGGuGGCg -3'
miRNA:   3'- cgGCUUUUCgUCUUUCUCgaGCU-CCG- -5'
28783 5' -49.8 NC_006146.1 + 47429 0.66 0.99801
Target:  5'- aCCGuuAGGauGGAGGAGCU-GGGGCa -3'
miRNA:   3'- cGGCuuUUCguCUUUCUCGAgCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 36234 0.66 0.99801
Target:  5'- gGCCGggGAGgAGgcAGGGCggcuucugGAGaGCu -3'
miRNA:   3'- -CGGCuuUUCgUCuuUCUCGag------CUC-CG- -5'
28783 5' -49.8 NC_006146.1 + 32008 0.66 0.99801
Target:  5'- cGCUaGGAGGaCAGAGGGgccucGGgaCGAGGCg -3'
miRNA:   3'- -CGGcUUUUC-GUCUUUC-----UCgaGCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 19947 0.66 0.99801
Target:  5'- gGCCucccuGGGCAGAucagggccGGGGGCgucugCGAGGUc -3'
miRNA:   3'- -CGGcuu--UUCGUCU--------UUCUCGa----GCUCCG- -5'
28783 5' -49.8 NC_006146.1 + 95037 0.66 0.99801
Target:  5'- cGCCGAcaaauGGAGCgAGAcauGGGGGCUCccacucgugGuGGCa -3'
miRNA:   3'- -CGGCU-----UUUCG-UCU---UUCUCGAG---------CuCCG- -5'
28783 5' -49.8 NC_006146.1 + 159604 0.66 0.99801
Target:  5'- uCCGAGuuGUAGAAcuGGcGCUgcUGGGGCa -3'
miRNA:   3'- cGGCUUuuCGUCUU--UCuCGA--GCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.