miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28785 3' -48.9 NC_006146.1 + 138815 0.66 0.999604
Target:  5'- gGGGuUGGUGAGcuaUUGggcGCCcGGACAGGGu -3'
miRNA:   3'- -CCU-ACCGUUCa--AAC---UGGaCCUGUUCC- -5'
28785 3' -48.9 NC_006146.1 + 162215 0.66 0.999604
Target:  5'- aGGUGGCucagauuGGUgcGAuCCUGGACAGc- -3'
miRNA:   3'- cCUACCGu------UCAaaCU-GGACCUGUUcc -5'
28785 3' -48.9 NC_006146.1 + 105338 0.66 0.999505
Target:  5'- aGGAgGGUGAGguaGACUccacGGACGGGGa -3'
miRNA:   3'- -CCUaCCGUUCaaaCUGGa---CCUGUUCC- -5'
28785 3' -48.9 NC_006146.1 + 33798 0.66 0.999505
Target:  5'- uGGGUccGCGGGUUUGgugcACCUGGAaggcaaCGGGGg -3'
miRNA:   3'- -CCUAc-CGUUCAAAC----UGGACCU------GUUCC- -5'
28785 3' -48.9 NC_006146.1 + 21985 0.66 0.999505
Target:  5'- -aGUGGCGGGga--AgCUGGugGAGGg -3'
miRNA:   3'- ccUACCGUUCaaacUgGACCugUUCC- -5'
28785 3' -48.9 NC_006146.1 + 71012 0.66 0.999385
Target:  5'- gGGGUGGgugUAGGUaUGGauUCUGGACGAGc -3'
miRNA:   3'- -CCUACC---GUUCAaACU--GGACCUGUUCc -5'
28785 3' -48.9 NC_006146.1 + 39998 0.66 0.999385
Target:  5'- uGGGUGGCccggcAGccUUUGACCggucaGACGGGGc -3'
miRNA:   3'- -CCUACCGu----UC--AAACUGGac---CUGUUCC- -5'
28785 3' -48.9 NC_006146.1 + 116710 0.66 0.999385
Target:  5'- cGGAgaccgGGCAGGUgcaGAucccCCUggcgaaagaggaGGACGAGGa -3'
miRNA:   3'- -CCUa----CCGUUCAaa-CU----GGA------------CCUGUUCC- -5'
28785 3' -48.9 NC_006146.1 + 88803 0.66 0.999242
Target:  5'- uGGAgccugcugGGCAuGUUUGG-CUGGGCcuGAGGc -3'
miRNA:   3'- -CCUa-------CCGUuCAAACUgGACCUG--UUCC- -5'
28785 3' -48.9 NC_006146.1 + 58791 0.66 0.999242
Target:  5'- cGGAgGGCAAGUUU--UgUGGGCGGGu -3'
miRNA:   3'- -CCUaCCGUUCAAAcuGgACCUGUUCc -5'
28785 3' -48.9 NC_006146.1 + 123538 0.66 0.99907
Target:  5'- cGGGUGGCAAGga-GACCgucgcaGACu-GGa -3'
miRNA:   3'- -CCUACCGUUCaaaCUGGac----CUGuuCC- -5'
28785 3' -48.9 NC_006146.1 + 147699 0.66 0.99907
Target:  5'- aGGAUGGCAAcag-GGCCaGGaaggcgGCGGGGc -3'
miRNA:   3'- -CCUACCGUUcaaaCUGGaCC------UGUUCC- -5'
28785 3' -48.9 NC_006146.1 + 161641 0.66 0.99907
Target:  5'- uGGUGGCcuuAGUUUGcUgUGGGCuGGGg -3'
miRNA:   3'- cCUACCGu--UCAAACuGgACCUGuUCC- -5'
28785 3' -48.9 NC_006146.1 + 83753 0.66 0.99907
Target:  5'- gGGccGUGaGCAGuGggUGGCCUGGugGgAGGu -3'
miRNA:   3'- -CC--UAC-CGUU-CaaACUGGACCugU-UCC- -5'
28785 3' -48.9 NC_006146.1 + 92024 0.66 0.99907
Target:  5'- uGGggGGCGGGcccGGCCUGGGgcugcugcUggGGg -3'
miRNA:   3'- -CCuaCCGUUCaaaCUGGACCU--------GuuCC- -5'
28785 3' -48.9 NC_006146.1 + 92113 0.66 0.99907
Target:  5'- uGGggGGCGGGcccGGCCUGGGgcugcugcUggGGg -3'
miRNA:   3'- -CCuaCCGUUCaaaCUGGACCU--------GuuCC- -5'
28785 3' -48.9 NC_006146.1 + 92173 0.66 0.99907
Target:  5'- uGGggGGCGGGcccGGCCUGGGgcugcugcUggGGg -3'
miRNA:   3'- -CCuaCCGUUCaaaCUGGACCU--------GuuCC- -5'
28785 3' -48.9 NC_006146.1 + 92263 0.66 0.99907
Target:  5'- uGGggGGCGGGcccGGCCUGGGgcugcugcUggGGg -3'
miRNA:   3'- -CCuaCCGUUCaaaCUGGACCU--------GuuCC- -5'
28785 3' -48.9 NC_006146.1 + 44529 0.67 0.998865
Target:  5'- gGGAuccaUGGCAGGauau-CCUGGAaAAGGg -3'
miRNA:   3'- -CCU----ACCGUUCaaacuGGACCUgUUCC- -5'
28785 3' -48.9 NC_006146.1 + 71492 0.67 0.998865
Target:  5'- --uUGGCcGGUgguGCCUGGGgGAGGc -3'
miRNA:   3'- ccuACCGuUCAaacUGGACCUgUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.