miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28785 5' -59.4 NC_006146.1 + 104077 0.66 0.779579
Target:  5'- uGCCUGACGGugaggcgcgaguuaCUCCgccucaUGCGCCgCCUg -3'
miRNA:   3'- gCGGACUGUCua------------GAGG------ACGCGG-GGAa -5'
28785 5' -59.4 NC_006146.1 + 104714 0.66 0.778666
Target:  5'- uCGCCUGGguCAG--CUCCUGCGUcuggCCCUc -3'
miRNA:   3'- -GCGGACU--GUCuaGAGGACGCG----GGGAa -5'
28785 5' -59.4 NC_006146.1 + 115250 0.66 0.769464
Target:  5'- cCGCCUGGCuccggCUgCUGCaCCCCUc -3'
miRNA:   3'- -GCGGACUGucua-GAgGACGcGGGGAa -5'
28785 5' -59.4 NC_006146.1 + 160620 0.66 0.769464
Target:  5'- cCGCCUGGCAugccagcuccgcGuacauUCUCCUGUGCuUCCUc -3'
miRNA:   3'- -GCGGACUGU------------Cu----AGAGGACGCG-GGGAa -5'
28785 5' -59.4 NC_006146.1 + 138391 0.66 0.760144
Target:  5'- aGCCagGAgGGGgagaaaUUCUGCGCCCCa- -3'
miRNA:   3'- gCGGa-CUgUCUag----AGGACGCGGGGaa -5'
28785 5' -59.4 NC_006146.1 + 42353 0.66 0.760144
Target:  5'- uGCCgcuccaGGAUCUCCcGCGCCgCCa- -3'
miRNA:   3'- gCGGacug--UCUAGAGGaCGCGG-GGaa -5'
28785 5' -59.4 NC_006146.1 + 120855 0.66 0.741184
Target:  5'- gGCCUGcUGGAcugcgccuccCUCCUGCGCCUCg- -3'
miRNA:   3'- gCGGACuGUCUa---------GAGGACGCGGGGaa -5'
28785 5' -59.4 NC_006146.1 + 22596 0.67 0.721855
Target:  5'- aCGUCUGGC---UCUCC-GCGCUCCUg -3'
miRNA:   3'- -GCGGACUGucuAGAGGaCGCGGGGAa -5'
28785 5' -59.4 NC_006146.1 + 56808 0.67 0.712074
Target:  5'- cCGUCUGGCGGGcggggCUUCUG-GCCCCc- -3'
miRNA:   3'- -GCGGACUGUCUa----GAGGACgCGGGGaa -5'
28785 5' -59.4 NC_006146.1 + 40203 0.68 0.662353
Target:  5'- uCGCCuaUGAuccgccCAGAUCUC--GCGCCCCUg -3'
miRNA:   3'- -GCGG--ACU------GUCUAGAGgaCGCGGGGAa -5'
28785 5' -59.4 NC_006146.1 + 48039 0.69 0.601986
Target:  5'- gGCCggcuCGGGUCgUCCaGCGCCCCg- -3'
miRNA:   3'- gCGGacu-GUCUAG-AGGaCGCGGGGaa -5'
28785 5' -59.4 NC_006146.1 + 117921 0.69 0.581958
Target:  5'- gGCC-GGCAGGUCcgCCUGCGCacuaCCg- -3'
miRNA:   3'- gCGGaCUGUCUAGa-GGACGCGg---GGaa -5'
28785 5' -59.4 NC_006146.1 + 96957 0.7 0.532607
Target:  5'- uGCCUGAC-GAUCUCUaaCGCCCUg- -3'
miRNA:   3'- gCGGACUGuCUAGAGGacGCGGGGaa -5'
28785 5' -59.4 NC_006146.1 + 106747 0.7 0.532607
Target:  5'- aGCCUGGCAGA-CUCCgagGCCCUg- -3'
miRNA:   3'- gCGGACUGUCUaGAGGacgCGGGGaa -5'
28785 5' -59.4 NC_006146.1 + 157758 0.7 0.520974
Target:  5'- gGCCUGGgAGGUCcgggguguugagCCUGCuGCCCCa- -3'
miRNA:   3'- gCGGACUgUCUAGa-----------GGACG-CGGGGaa -5'
28785 5' -59.4 NC_006146.1 + 151603 0.7 0.520974
Target:  5'- gGCCUGGgAGGUCcgggguguugagCCUGCuGCCCCa- -3'
miRNA:   3'- gCGGACUgUCUAGa-----------GGACG-CGGGGaa -5'
28785 5' -59.4 NC_006146.1 + 148525 0.7 0.520974
Target:  5'- gGCCUGGgAGGUCcgggguguugagCCUGCuGCCCCa- -3'
miRNA:   3'- gCGGACUgUCUAGa-----------GGACG-CGGGGaa -5'
28785 5' -59.4 NC_006146.1 + 145447 0.7 0.520974
Target:  5'- gGCCUGGgAGGUCcgggguguugagCCUGCuGCCCCa- -3'
miRNA:   3'- gCGGACUgUCUAGa-----------GGACG-CGGGGaa -5'
28785 5' -59.4 NC_006146.1 + 142369 0.7 0.520974
Target:  5'- gGCCUGGgAGGUCcgggguguugagCCUGCuGCCCCa- -3'
miRNA:   3'- gCGGACUgUCUAGa-----------GGACG-CGGGGaa -5'
28785 5' -59.4 NC_006146.1 + 43718 0.71 0.466304
Target:  5'- gGuCCUGGCGGAUUUCCUcCGCCCg-- -3'
miRNA:   3'- gC-GGACUGUCUAGAGGAcGCGGGgaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.