miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28786 3' -55.5 NC_006146.1 + 137214 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 137121 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 137028 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 136935 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 136842 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 136749 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 136657 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 136564 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 136471 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 136378 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 136285 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 136192 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 136099 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 136006 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 135913 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 135820 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 135635 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 135542 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 135449 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 135356 0.69 0.802853
Target:  5'- cGGUcCUGGAGcucgggGCCggggGcCGGGUGCCC-CUg -3'
miRNA:   3'- -CCA-GACCUU------UGGa---C-GUCCACGGGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.