miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28786 5' -58 NC_006146.1 + 5407 0.66 0.855334
Target:  5'- cGGGGCuGCgUCCUGcCCUgCUGgauucagGGCUCAc -3'
miRNA:   3'- -CCUCGcCG-AGGACuGGA-GAC-------UCGAGU- -5'
28786 5' -58 NC_006146.1 + 15888 0.74 0.406277
Target:  5'- cGGAG-GGCUCgCUGGCCUC-GAGC-CAg -3'
miRNA:   3'- -CCUCgCCGAG-GACUGGAGaCUCGaGU- -5'
28786 5' -58 NC_006146.1 + 39294 0.66 0.863632
Target:  5'- cGGcaGGUGGCagcagaggCCUGugUaCUGGGCUCGg -3'
miRNA:   3'- -CC--UCGCCGa-------GGACugGaGACUCGAGU- -5'
28786 5' -58 NC_006146.1 + 45547 0.69 0.674243
Target:  5'- uGGGCuuGGCcgcCCUGGCCUCcgcgagGAGCUCGc -3'
miRNA:   3'- cCUCG--CCGa--GGACUGGAGa-----CUCGAGU- -5'
28786 5' -58 NC_006146.1 + 52985 0.67 0.819018
Target:  5'- cGGGGCgGGCgucucgaggccccucUUCUGGCC-CUGGGcCUCAc -3'
miRNA:   3'- -CCUCG-CCG---------------AGGACUGGaGACUC-GAGU- -5'
28786 5' -58 NC_006146.1 + 53620 0.67 0.798248
Target:  5'- aGGGGUGGuCUCCgggucGGCaggaUCgcgGGGCUCAg -3'
miRNA:   3'- -CCUCGCC-GAGGa----CUGg---AGa--CUCGAGU- -5'
28786 5' -58 NC_006146.1 + 61762 0.69 0.664231
Target:  5'- aGGcAGCGGC-CgaGGCCUCUGuGCcCAa -3'
miRNA:   3'- -CC-UCGCCGaGgaCUGGAGACuCGaGU- -5'
28786 5' -58 NC_006146.1 + 62377 0.66 0.824067
Target:  5'- cGGAGaGGCcCCUGGCCguucAGCUCGc -3'
miRNA:   3'- -CCUCgCCGaGGACUGGagacUCGAGU- -5'
28786 5' -58 NC_006146.1 + 73203 0.66 0.832346
Target:  5'- cGAGgGGCUCCUGGCgUUCUcgaucaucgaGAGCa-- -3'
miRNA:   3'- cCUCgCCGAGGACUG-GAGA----------CUCGagu -5'
28786 5' -58 NC_006146.1 + 74486 0.66 0.856098
Target:  5'- uGAGCGGCg-CUGugUUCagGAGCUg- -3'
miRNA:   3'- cCUCGCCGagGACugGAGa-CUCGAgu -5'
28786 5' -58 NC_006146.1 + 92086 0.66 0.824067
Target:  5'- gGGGGCGGC-CC-GGCCUg-GGGCUg- -3'
miRNA:   3'- -CCUCGCCGaGGaCUGGAgaCUCGAgu -5'
28786 5' -58 NC_006146.1 + 92355 0.67 0.780296
Target:  5'- uGGGGCGGCUCgcauuggcaUUGGCCguaCUgGGGUUCGc -3'
miRNA:   3'- -CCUCGCCGAG---------GACUGGa--GA-CUCGAGU- -5'
28786 5' -58 NC_006146.1 + 98309 0.66 0.848368
Target:  5'- aGGGCGuGCUCCgUGGCCgUCUG-GCa-- -3'
miRNA:   3'- cCUCGC-CGAGG-ACUGG-AGACuCGagu -5'
28786 5' -58 NC_006146.1 + 101216 0.7 0.644139
Target:  5'- -cAGCGuGUUCCUGGCC-CUGGGCa-- -3'
miRNA:   3'- ccUCGC-CGAGGACUGGaGACUCGagu -5'
28786 5' -58 NC_006146.1 + 108579 0.75 0.357515
Target:  5'- uGGcGGCGGCgUCuCUGGCCUCgcUGGGCUCu -3'
miRNA:   3'- -CC-UCGCCG-AG-GACUGGAG--ACUCGAGu -5'
28786 5' -58 NC_006146.1 + 112517 0.68 0.713875
Target:  5'- aGGGGcCGGUggagggCCUGggucACCUCgaacucgGAGCUCAg -3'
miRNA:   3'- -CCUC-GCCGa-----GGAC----UGGAGa------CUCGAGU- -5'
28786 5' -58 NC_006146.1 + 114618 0.66 0.832346
Target:  5'- -aGGCGGCgcuggacgUCCUGGCCUCcucGCUCc -3'
miRNA:   3'- ccUCGCCG--------AGGACUGGAGacuCGAGu -5'
28786 5' -58 NC_006146.1 + 116962 0.7 0.603907
Target:  5'- uGAGCcccuGCgUCCgGACCUCgagGAGCUCAa -3'
miRNA:   3'- cCUCGc---CG-AGGaCUGGAGa--CUCGAGU- -5'
28786 5' -58 NC_006146.1 + 117575 0.68 0.713875
Target:  5'- --cGCGGCcgCCgGGCCUCcucGGGCUCGg -3'
miRNA:   3'- ccuCGCCGa-GGaCUGGAGa--CUCGAGU- -5'
28786 5' -58 NC_006146.1 + 120379 1.1 0.001665
Target:  5'- uGGAGCGGCUCCUGACCUCUGAGCUCAa -3'
miRNA:   3'- -CCUCGCCGAGGACUGGAGACUCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.