miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28786 5' -58 NC_006146.1 + 101216 0.7 0.644139
Target:  5'- -cAGCGuGUUCCUGGCC-CUGGGCa-- -3'
miRNA:   3'- ccUCGC-CGAGGACUGGaGACUCGagu -5'
28786 5' -58 NC_006146.1 + 116962 0.7 0.603907
Target:  5'- uGAGCcccuGCgUCCgGACCUCgagGAGCUCAa -3'
miRNA:   3'- cCUCGc---CG-AGGaCUGGAGa--CUCGAGU- -5'
28786 5' -58 NC_006146.1 + 142761 0.71 0.593881
Target:  5'- --cGcCGGCUCCaaccucgGGCCUCUGGGCUg- -3'
miRNA:   3'- ccuC-GCCGAGGa------CUGGAGACUCGAgu -5'
28786 5' -58 NC_006146.1 + 158152 0.71 0.593881
Target:  5'- --cGcCGGCUCCaaccucgGGCCUCUGGGCUg- -3'
miRNA:   3'- ccuC-GCCGAGGa------CUGGAGACUCGAgu -5'
28786 5' -58 NC_006146.1 + 155073 0.71 0.593881
Target:  5'- --cGcCGGCUCCaaccucgGGCCUCUGGGCUg- -3'
miRNA:   3'- ccuC-GCCGAGGa------CUGGAGACUCGAgu -5'
28786 5' -58 NC_006146.1 + 151995 0.71 0.593881
Target:  5'- --cGcCGGCUCCaaccucgGGCCUCUGGGCUg- -3'
miRNA:   3'- ccuC-GCCGAGGa------CUGGAGACUCGAgu -5'
28786 5' -58 NC_006146.1 + 148917 0.71 0.593881
Target:  5'- --cGcCGGCUCCaaccucgGGCCUCUGGGCUg- -3'
miRNA:   3'- ccuC-GCCGAGGa------CUGGAGACUCGAgu -5'
28786 5' -58 NC_006146.1 + 145839 0.71 0.593881
Target:  5'- --cGcCGGCUCCaaccucgGGCCUCUGGGCUg- -3'
miRNA:   3'- ccuC-GCCGAGGa------CUGGAGACUCGAgu -5'
28786 5' -58 NC_006146.1 + 142159 0.73 0.432175
Target:  5'- aGGGCGGCUCCccucUGACauuCUUUGGGUUCAa -3'
miRNA:   3'- cCUCGCCGAGG----ACUG---GAGACUCGAGU- -5'
28786 5' -58 NC_006146.1 + 145237 0.73 0.432175
Target:  5'- aGGGCGGCUCCccucUGACauuCUUUGGGUUCAa -3'
miRNA:   3'- cCUCGCCGAGG----ACUG---GAGACUCGAGU- -5'
28786 5' -58 NC_006146.1 + 148315 0.73 0.432175
Target:  5'- aGGGCGGCUCCccucUGACauuCUUUGGGUUCAa -3'
miRNA:   3'- cCUCGCCGAGG----ACUG---GAGACUCGAGU- -5'
28786 5' -58 NC_006146.1 + 151393 0.73 0.432175
Target:  5'- aGGGCGGCUCCccucUGACauuCUUUGGGUUCAa -3'
miRNA:   3'- cCUCGCCGAGG----ACUG---GAGACUCGAGU- -5'
28786 5' -58 NC_006146.1 + 157549 0.73 0.432175
Target:  5'- aGGGCGGCUCCccucUGACauuCUUUGGGUUCAa -3'
miRNA:   3'- cCUCGCCGAGG----ACUG---GAGACUCGAGU- -5'
28786 5' -58 NC_006146.1 + 154471 0.73 0.432175
Target:  5'- aGGGCGGCUCCccucUGACauuCUUUGGGUUCAa -3'
miRNA:   3'- cCUCGCCGAGG----ACUG---GAGACUCGAGU- -5'
28786 5' -58 NC_006146.1 + 15888 0.74 0.406277
Target:  5'- cGGAG-GGCUCgCUGGCCUC-GAGC-CAg -3'
miRNA:   3'- -CCUCgCCGAG-GACUGGAGaCUCGaGU- -5'
28786 5' -58 NC_006146.1 + 108579 0.75 0.357515
Target:  5'- uGGcGGCGGCgUCuCUGGCCUCgcUGGGCUCu -3'
miRNA:   3'- -CC-UCGCCG-AG-GACUGGAG--ACUCGAGu -5'
28786 5' -58 NC_006146.1 + 120379 1.1 0.001665
Target:  5'- uGGAGCGGCUCCUGACCUCUGAGCUCAa -3'
miRNA:   3'- -CCUCGCCGAGGACUGGAGACUCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.