miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28787 3' -55.4 NC_006146.1 + 169966 0.72 0.663643
Target:  5'- -gGCCUUcggGACGggaGGCCggcgcGCGCCCGGGg -3'
miRNA:   3'- ggUGGAAa--CUGUa--CCGG-----UGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 169034 0.72 0.663643
Target:  5'- -gGCCUUcggGACGggaGGCCggcgcGCGCCCGGGg -3'
miRNA:   3'- ggUGGAAa--CUGUa--CCGG-----UGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 168102 0.72 0.663643
Target:  5'- -gGCCUUcggGACGggaGGCCggcgcGCGCCCGGGg -3'
miRNA:   3'- ggUGGAAa--CUGUa--CCGG-----UGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 167170 0.72 0.663643
Target:  5'- -gGCCUUcggGACGggaGGCCggcgcGCGCCCGGGg -3'
miRNA:   3'- ggUGGAAa--CUGUa--CCGG-----UGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 167161 0.66 0.951314
Target:  5'- cCCACCccgGGCugaagGGCCACGCggcccCCaGAGa -3'
miRNA:   3'- -GGUGGaaaCUGua---CCGGUGCG-----GG-CUC- -5'
28787 3' -55.4 NC_006146.1 + 162363 0.74 0.566635
Target:  5'- gCGCCUUgGAgAUGGagccccuuggcgcgcCCGCGCCCGGGa -3'
miRNA:   3'- gGUGGAAaCUgUACC---------------GGUGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 161022 0.68 0.892644
Target:  5'- aCCGCCUUUGugGgugagcgGGCCgu-CCUGAGu -3'
miRNA:   3'- -GGUGGAAACugUa------CCGGugcGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 159535 0.7 0.780614
Target:  5'- cCCACCUgccUGACGcgcagcgccUGcGCCAgGCCCGuGu -3'
miRNA:   3'- -GGUGGAa--ACUGU---------AC-CGGUgCGGGCuC- -5'
28787 3' -55.4 NC_006146.1 + 159503 0.68 0.853814
Target:  5'- uCCACCUUcGAUgucccaggggccaAUGGCcucgaguuuuuucaUugGCCCGAGg -3'
miRNA:   3'- -GGUGGAAaCUG-------------UACCG--------------GugCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 159472 0.69 0.833014
Target:  5'- gCCACC-UUGGCcaccuUGGCCugGUCCu-- -3'
miRNA:   3'- -GGUGGaAACUGu----ACCGGugCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 158270 0.67 0.911439
Target:  5'- -gGCC--UGGCcgggucuaagGUGGCCugGCCUGGGc -3'
miRNA:   3'- ggUGGaaACUG----------UACCGGugCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 158118 0.66 0.933245
Target:  5'- uCCGCCccUG-CAgGGCCGCGUCCa-- -3'
miRNA:   3'- -GGUGGaaACuGUaCCGGUGCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 157968 0.66 0.951314
Target:  5'- gCCACCg--GGCggGGCCAgGgCCUccaGAGg -3'
miRNA:   3'- -GGUGGaaaCUGuaCCGGUgC-GGG---CUC- -5'
28787 3' -55.4 NC_006146.1 + 155191 0.67 0.911439
Target:  5'- -gGCC--UGGCcgggucuaagGUGGCCugGCCUGGGc -3'
miRNA:   3'- ggUGGaaACUG----------UACCGGugCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 154890 0.66 0.951314
Target:  5'- gCCACCg--GGCggGGCCAgGgCCUccaGAGg -3'
miRNA:   3'- -GGUGGaaaCUGuaCCGGUgC-GGG---CUC- -5'
28787 3' -55.4 NC_006146.1 + 154885 0.69 0.849128
Target:  5'- cCCGUCggggGGCAgGGCCuCGCCCGGGc -3'
miRNA:   3'- -GGUGGaaa-CUGUaCCGGuGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 152113 0.67 0.911439
Target:  5'- -gGCC--UGGCcgggucuaagGUGGCCugGCCUGGGc -3'
miRNA:   3'- ggUGGaaACUG----------UACCGGugCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 151812 0.66 0.951314
Target:  5'- gCCACCg--GGCggGGCCAgGgCCUccaGAGg -3'
miRNA:   3'- -GGUGGaaaCUGuaCCGGUgC-GGG---CUC- -5'
28787 3' -55.4 NC_006146.1 + 149035 0.67 0.911439
Target:  5'- -gGCC--UGGCcgggucuaagGUGGCCugGCCUGGGc -3'
miRNA:   3'- ggUGGaaACUG----------UACCGGugCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 148734 0.66 0.951314
Target:  5'- gCCACCg--GGCggGGCCAgGgCCUccaGAGg -3'
miRNA:   3'- -GGUGGaaaCUGuaCCGGUgC-GGG---CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.