miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28787 3' -55.4 NC_006146.1 + 25387 0.66 0.933245
Target:  5'- uCCGCCgc-GGCAagGGCUACGUCaGAGu -3'
miRNA:   3'- -GGUGGaaaCUGUa-CCGGUGCGGgCUC- -5'
28787 3' -55.4 NC_006146.1 + 26508 0.66 0.927623
Target:  5'- gCCcCCUUugcccccUGGCA-GGCCA-GCCCGAc -3'
miRNA:   3'- -GGuGGAA-------ACUGUaCCGGUgCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 28025 0.75 0.513488
Target:  5'- gCCACCUUaGACccGGCCAgGCCCc-- -3'
miRNA:   3'- -GGUGGAAaCUGuaCCGGUgCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 29490 0.7 0.789724
Target:  5'- cCCACUgu--GCAUGGUCugGUCUGAGc -3'
miRNA:   3'- -GGUGGaaacUGUACCGGugCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 29586 0.66 0.927623
Target:  5'- gCCcCCUUugcccccUGGCA-GGCCA-GCCCGAc -3'
miRNA:   3'- -GGuGGAA-------ACUGUaCCGGUgCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 30136 0.72 0.657576
Target:  5'- cCCAUgcaggggggugGGCAUGGCCACGCauCCGAGa -3'
miRNA:   3'- -GGUGgaaa-------CUGUACCGGUGCG--GGCUC- -5'
28787 3' -55.4 NC_006146.1 + 33391 0.67 0.911439
Target:  5'- cCCGCUccggguggGGgGUGGCC-CGCCUGGGc -3'
miRNA:   3'- -GGUGGaaa-----CUgUACCGGuGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 34991 0.73 0.633251
Target:  5'- aUCACCUUUGcACAuuuggucagcUGaccgaugcucGCCACGCCCGGGu -3'
miRNA:   3'- -GGUGGAAAC-UGU----------AC----------CGGUGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 35091 0.66 0.933245
Target:  5'- gCUGCCUUUGGCAUGaaucacuuugaGCCACuaaGCCCc-- -3'
miRNA:   3'- -GGUGGAAACUGUAC-----------CGGUG---CGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 41578 0.71 0.742956
Target:  5'- gCCGCCUacUGGC-UGGCCGaggcggagagGCCCGGGg -3'
miRNA:   3'- -GGUGGAa-ACUGuACCGGUg---------CGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 41769 0.69 0.841164
Target:  5'- cCCGCCg--GA---GGCCcuGCGCCCGGGc -3'
miRNA:   3'- -GGUGGaaaCUguaCCGG--UGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 47221 0.68 0.88864
Target:  5'- gCCGCCUccgccacgaucUUgagcuggcgcgggucGACGUGGCccCugGCCCGGGu -3'
miRNA:   3'- -GGUGGA-----------AA---------------CUGUACCG--GugCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 48195 0.68 0.891983
Target:  5'- gUCGCCgacUUGGCAUccggggacuggagGGCCuggcGCGCCUGGGu -3'
miRNA:   3'- -GGUGGa--AACUGUA-------------CCGG----UGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 50795 0.72 0.663643
Target:  5'- uCCAUCUcgGGCGUGGCCAUGUCaaAGg -3'
miRNA:   3'- -GGUGGAaaCUGUACCGGUGCGGgcUC- -5'
28787 3' -55.4 NC_006146.1 + 51818 0.7 0.787005
Target:  5'- gCCACCcgUUccccggggcGGCGUggaggggggcucggGGCCugGCCCGAGc -3'
miRNA:   3'- -GGUGGa-AA---------CUGUA--------------CCGGugCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 52324 0.68 0.856899
Target:  5'- -gACCc-UGACGUgGGCCGgggUGCCCGGGg -3'
miRNA:   3'- ggUGGaaACUGUA-CCGGU---GCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 52681 0.66 0.93811
Target:  5'- gCCGCCUcuccGAgAUGGUCGCugccguGUCCGGGg -3'
miRNA:   3'- -GGUGGAaa--CUgUACCGGUG------CGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 52929 0.67 0.911439
Target:  5'- gCACCUUUGAgaauuuCAUGGCgAggaucguggacuCGCCgGAGa -3'
miRNA:   3'- gGUGGAAACU------GUACCGgU------------GCGGgCUC- -5'
28787 3' -55.4 NC_006146.1 + 53525 0.67 0.899138
Target:  5'- gCCGCgcgUGugAaGGCCGCGaggaCCGAGg -3'
miRNA:   3'- -GGUGgaaACugUaCCGGUGCg---GGCUC- -5'
28787 3' -55.4 NC_006146.1 + 56114 0.66 0.942742
Target:  5'- uCCACgaa-GGCgaagGUGGCCGCGggcCCCGAGa -3'
miRNA:   3'- -GGUGgaaaCUG----UACCGGUGC---GGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.