miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28787 3' -55.4 NC_006146.1 + 145957 0.67 0.911439
Target:  5'- -gGCC--UGGCcgggucuaagGUGGCCugGCCUGGGc -3'
miRNA:   3'- ggUGGaaACUG----------UACCGGugCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 145657 0.66 0.951314
Target:  5'- gCCACCg--GGCggGGCCAgGgCCUccaGAGg -3'
miRNA:   3'- -GGUGGaaaCUGuaCCGGUgC-GGG---CUC- -5'
28787 3' -55.4 NC_006146.1 + 142879 0.67 0.911439
Target:  5'- -gGCC--UGGCcgggucuaagGUGGCCugGCCUGGGc -3'
miRNA:   3'- ggUGGaaACUG----------UACCGGugCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 142579 0.66 0.951314
Target:  5'- gCCACCg--GGCggGGCCAgGgCCUccaGAGg -3'
miRNA:   3'- -GGUGGaaaCUGuaCCGGUgC-GGG---CUC- -5'
28787 3' -55.4 NC_006146.1 + 140749 0.72 0.673735
Target:  5'- gCCGCuCUcgGauGCGUGGCCAUGCCCa-- -3'
miRNA:   3'- -GGUG-GAaaC--UGUACCGGUGCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 138821 0.73 0.633251
Target:  5'- aUCACCUUUGcACAuuuggucagcUGaccgaugcucGCCACGCCCGGGu -3'
miRNA:   3'- -GGUGGAAAC-UGU----------AC----------CGGUGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 132824 0.68 0.878988
Target:  5'- gCUGCCUUcGACucucccccuuUGGCCACaGCCUGAc -3'
miRNA:   3'- -GGUGGAAaCUGu---------ACCGGUG-CGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 130224 0.67 0.905403
Target:  5'- gCACCUcaggGugGUGGCCAgGCCg--- -3'
miRNA:   3'- gGUGGAaa--CugUACCGGUgCGGgcuc -5'
28787 3' -55.4 NC_006146.1 + 127379 0.7 0.807516
Target:  5'- cCCACUgauggUGGCcgGcaGCCugGCCCGGa -3'
miRNA:   3'- -GGUGGaa---ACUGuaC--CGGugCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 124984 0.68 0.878988
Target:  5'- uCCACCUacGGCAcGGUCAcCGgCCGGGc -3'
miRNA:   3'- -GGUGGAaaCUGUaCCGGU-GCgGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 124427 0.7 0.807516
Target:  5'- gCACCUUUGcCAUcaGGUCAUGCCaUGGGa -3'
miRNA:   3'- gGUGGAAACuGUA--CCGGUGCGG-GCUC- -5'
28787 3' -55.4 NC_006146.1 + 123249 0.74 0.592749
Target:  5'- gCCGCCgcgcugGGCcgGGCCGCGgCCaGAGa -3'
miRNA:   3'- -GGUGGaaa---CUGuaCCGGUGCgGG-CUC- -5'
28787 3' -55.4 NC_006146.1 + 122826 0.66 0.936192
Target:  5'- gCCGCCgugagcgaguACGUGGaCCGCacgcuGCCCGGGg -3'
miRNA:   3'- -GGUGGaaac------UGUACC-GGUG-----CGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 121355 0.71 0.752536
Target:  5'- -gGCCUggccGGCGUGGCCucCGCCCccaGAGg -3'
miRNA:   3'- ggUGGAaa--CUGUACCGGu-GCGGG---CUC- -5'
28787 3' -55.4 NC_006146.1 + 120101 1.11 0.002742
Target:  5'- aCCACCUUUGACAUGGCCACGCCCGAGa -3'
miRNA:   3'- -GGUGGAAACUGUACCGGUGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 119047 0.67 0.905403
Target:  5'- cCCAUCcccgGGCucgGGCCAgGCcCCGAGc -3'
miRNA:   3'- -GGUGGaaa-CUGua-CCGGUgCG-GGCUC- -5'
28787 3' -55.4 NC_006146.1 + 116864 0.77 0.421237
Target:  5'- aCCACCgccGACAUGGCCGCccuCCgGAGg -3'
miRNA:   3'- -GGUGGaaaCUGUACCGGUGc--GGgCUC- -5'
28787 3' -55.4 NC_006146.1 + 116656 0.68 0.878988
Target:  5'- cCCGCC--UGACcgGGgC-CGCCCaGAGg -3'
miRNA:   3'- -GGUGGaaACUGuaCCgGuGCGGG-CUC- -5'
28787 3' -55.4 NC_006146.1 + 116232 0.67 0.918937
Target:  5'- gCCACCgucugggaggucuacGACggGGCCccuccaAUGCCCGGGg -3'
miRNA:   3'- -GGUGGaaa------------CUGuaCCGG------UGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 115904 0.68 0.864469
Target:  5'- cCCGCCcggggGGCuuccGGCCAC-CCCGGGu -3'
miRNA:   3'- -GGUGGaaa--CUGua--CCGGUGcGGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.