miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28787 3' -55.4 NC_006146.1 + 56303 0.72 0.69381
Target:  5'- gCCGCCUc-GAgGUGGCCcaggccguagcuGCGCCgCGAGa -3'
miRNA:   3'- -GGUGGAaaCUgUACCGG------------UGCGG-GCUC- -5'
28787 3' -55.4 NC_006146.1 + 56387 0.69 0.833014
Target:  5'- gCCGCCggguaaGCGUGGCCGCuCgCGAGg -3'
miRNA:   3'- -GGUGGaaac--UGUACCGGUGcGgGCUC- -5'
28787 3' -55.4 NC_006146.1 + 56570 0.67 0.922811
Target:  5'- uCCACCUccGuCAggggcGGCCGgGCgCCGAGc -3'
miRNA:   3'- -GGUGGAaaCuGUa----CCGGUgCG-GGCUC- -5'
28787 3' -55.4 NC_006146.1 + 56986 0.71 0.733281
Target:  5'- gCCACCUgcugguuaaGAUAgaagggGGCCAUGgCCGAGg -3'
miRNA:   3'- -GGUGGAaa-------CUGUa-----CCGGUGCgGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 57208 0.71 0.752536
Target:  5'- gCCGCCguccccgGGCcggaGGCCGgGCCCGGGc -3'
miRNA:   3'- -GGUGGaaa----CUGua--CCGGUgCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 57779 0.68 0.878988
Target:  5'- cCCACCggcggaaGACAUGGCauccCCCGGGg -3'
miRNA:   3'- -GGUGGaaa----CUGUACCGgugcGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 58078 0.66 0.93811
Target:  5'- gCACCgg-GACAuUGGCCcCGgCCGGu -3'
miRNA:   3'- gGUGGaaaCUGU-ACCGGuGCgGGCUc -5'
28787 3' -55.4 NC_006146.1 + 59182 0.75 0.494313
Target:  5'- gCCACCUUUGugGUGGCC-UGCuCCa-- -3'
miRNA:   3'- -GGUGGAAACugUACCGGuGCG-GGcuc -5'
28787 3' -55.4 NC_006146.1 + 59221 0.71 0.741029
Target:  5'- cCCACCUacgacuccaggGACAUGGCCuccauGgGCCUGGGu -3'
miRNA:   3'- -GGUGGAaa---------CUGUACCGG-----UgCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 59466 0.66 0.946713
Target:  5'- uCC-CCgaUGAUggaggcaAUGGCCACGgCUGAGu -3'
miRNA:   3'- -GGuGGaaACUG-------UACCGGUGCgGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 60432 0.68 0.871834
Target:  5'- uUCACCUU---CcUGGCCAUGgCCGAGa -3'
miRNA:   3'- -GGUGGAAacuGuACCGGUGCgGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 62368 0.66 0.951314
Target:  5'- cCCGCUguacgagGACggGGCCucgGCCUGGGg -3'
miRNA:   3'- -GGUGGaaa----CUGuaCCGGug-CGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 62840 0.66 0.928146
Target:  5'- -gGCCgc---CGUGGCCAgGCCgGAGg -3'
miRNA:   3'- ggUGGaaacuGUACCGGUgCGGgCUC- -5'
28787 3' -55.4 NC_006146.1 + 65224 0.68 0.885927
Target:  5'- uCCucCCUUUGACGUGaGCC--GCCUGAa -3'
miRNA:   3'- -GGu-GGAAACUGUAC-CGGugCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 66187 0.72 0.667683
Target:  5'- aCCACgagcugaugguCUgUGACAUgauucagauuggaaaGGCCACGUCCGAGg -3'
miRNA:   3'- -GGUG-----------GAaACUGUA---------------CCGGUGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 67203 0.67 0.922811
Target:  5'- uCCACUg--GcCGUGGCCGguCGCCUGGc -3'
miRNA:   3'- -GGUGGaaaCuGUACCGGU--GCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 67301 0.66 0.93811
Target:  5'- uCCGCCagcucCcgGGCCACGUCCGc- -3'
miRNA:   3'- -GGUGGaaacuGuaCCGGUGCGGGCuc -5'
28787 3' -55.4 NC_006146.1 + 69462 0.72 0.659599
Target:  5'- gCCACCUgcacggcuuaaccagGaugcccuGCAUGGCCAgGCCCGAc -3'
miRNA:   3'- -GGUGGAaa-------------C-------UGUACCGGUgCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 70144 0.66 0.951314
Target:  5'- gCCGCCUUcgccUGGCuccUGGCCgggGCGCUgguggccggCGAGg -3'
miRNA:   3'- -GGUGGAA----ACUGu--ACCGG---UGCGG---------GCUC- -5'
28787 3' -55.4 NC_006146.1 + 70894 0.68 0.878988
Target:  5'- gCCGCCUcccGACGUGcCCGCuCCCGAu -3'
miRNA:   3'- -GGUGGAaa-CUGUACcGGUGcGGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.