miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28788 3' -60 NC_006146.1 + 84278 0.66 0.71812
Target:  5'- uGugUCCUgccCAGCugCCCCUCAAGCccaGCUGc -3'
miRNA:   3'- -UugAGGA---GUCG--GGGGAGUUCGc--CGAU- -5'
28788 3' -60 NC_006146.1 + 16278 0.66 0.71812
Target:  5'- cGCUCCgggcGCCUCCUCGGGUucagccgcuGGCUGg -3'
miRNA:   3'- uUGAGGagu-CGGGGGAGUUCG---------CCGAU- -5'
28788 3' -60 NC_006146.1 + 28590 0.66 0.71812
Target:  5'- cGCUCCgggcGCCUCCUCGGGUucagccgcuGGCUGg -3'
miRNA:   3'- uUGAGGagu-CGGGGGAGUUCG---------CCGAU- -5'
28788 3' -60 NC_006146.1 + 25512 0.66 0.71812
Target:  5'- cGCUCCgggcGCCUCCUCGGGUucagccgcuGGCUGg -3'
miRNA:   3'- uUGAGGagu-CGGGGGAGUUCG---------CCGAU- -5'
28788 3' -60 NC_006146.1 + 22434 0.66 0.71812
Target:  5'- cGCUCCgggcGCCUCCUCGGGUucagccgcuGGCUGg -3'
miRNA:   3'- uUGAGGagu-CGGGGGAGUUCG---------CCGAU- -5'
28788 3' -60 NC_006146.1 + 13200 0.66 0.71812
Target:  5'- cGCUCCgggcGCCUCCUCGGGUucagccgcuGGCUGg -3'
miRNA:   3'- uUGAGGagu-CGGGGGAGUUCG---------CCGAU- -5'
28788 3' -60 NC_006146.1 + 19356 0.66 0.71812
Target:  5'- cGCUCCgggcGCCUCCUCGGGUucagccgcuGGCUGg -3'
miRNA:   3'- uUGAGGagu-CGGGGGAGUUCG---------CCGAU- -5'
28788 3' -60 NC_006146.1 + 141555 0.66 0.708222
Target:  5'- cACcCCUCAGCCCCCUCuguuccuUGGUg- -3'
miRNA:   3'- uUGaGGAGUCGGGGGAGuuc----GCCGau -5'
28788 3' -60 NC_006146.1 + 80249 0.66 0.708222
Target:  5'- ---aCCUCuGCCaCCCUCGccGCGGCg- -3'
miRNA:   3'- uugaGGAGuCGG-GGGAGUu-CGCCGau -5'
28788 3' -60 NC_006146.1 + 160648 0.66 0.708222
Target:  5'- -uCUCCUguGCUUCCUCAGGgaGGCc- -3'
miRNA:   3'- uuGAGGAguCGGGGGAGUUCg-CCGau -5'
28788 3' -60 NC_006146.1 + 154456 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5'
28788 3' -60 NC_006146.1 + 143010 0.66 0.69826
Target:  5'- cAGCUCC-CGGUCCCCUCcgcuuGCGuGCc- -3'
miRNA:   3'- -UUGAGGaGUCGGGGGAGuu---CGC-CGau -5'
28788 3' -60 NC_006146.1 + 142144 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5'
28788 3' -60 NC_006146.1 + 145222 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5'
28788 3' -60 NC_006146.1 + 148300 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5'
28788 3' -60 NC_006146.1 + 157534 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5'
28788 3' -60 NC_006146.1 + 151378 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5'
28788 3' -60 NC_006146.1 + 87704 0.66 0.678182
Target:  5'- uGGCUCCaUAGCCaCCCUCucccAGCuGCUGc -3'
miRNA:   3'- -UUGAGGaGUCGG-GGGAGu---UCGcCGAU- -5'
28788 3' -60 NC_006146.1 + 65045 0.67 0.657954
Target:  5'- -cCUCCcCGGCUUCCUCGAGCucuuGGCa- -3'
miRNA:   3'- uuGAGGaGUCGGGGGAGUUCG----CCGau -5'
28788 3' -60 NC_006146.1 + 111132 0.67 0.647805
Target:  5'- cAC-CCUCAaCCCCCagguggcCGGGCGGCUGg -3'
miRNA:   3'- uUGaGGAGUcGGGGGa------GUUCGCCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.