miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28788 5' -58.8 NC_006146.1 + 27866 0.65 0.820071
Target:  5'- cCUCGGgCCCCUCuGGacucCGGCUuccccaucccagccGCUCCc -3'
miRNA:   3'- -GAGUCgGGGGAGuUC----GCCGA--------------UGAGGu -5'
28788 5' -58.8 NC_006146.1 + 15554 0.65 0.820071
Target:  5'- cCUCGGgCCCCUCuGGacucCGGCUuccccaucccagccGCUCCc -3'
miRNA:   3'- -GAGUCgGGGGAGuUC----GCCGA--------------UGAGGu -5'
28788 5' -58.8 NC_006146.1 + 12475 0.65 0.820071
Target:  5'- cCUCGGgCCCCUCuGGacucCGGCUuccccaucccagccGCUCCc -3'
miRNA:   3'- -GAGUCgGGGGAGuUC----GCCGA--------------UGAGGu -5'
28788 5' -58.8 NC_006146.1 + 18632 0.65 0.820071
Target:  5'- cCUCGGgCCCCUCuGGacucCGGCUuccccaucccagccGCUCCc -3'
miRNA:   3'- -GAGUCgGGGGAGuUC----GCCGA--------------UGAGGu -5'
28788 5' -58.8 NC_006146.1 + 24788 0.65 0.820071
Target:  5'- cCUCGGgCCCCUCuGGacucCGGCUuccccaucccagccGCUCCc -3'
miRNA:   3'- -GAGUCgGGGGAGuUC----GCCGA--------------UGAGGu -5'
28788 5' -58.8 NC_006146.1 + 21710 0.65 0.820071
Target:  5'- cCUCGGgCCCCUCuGGacucCGGCUuccccaucccagccGCUCCc -3'
miRNA:   3'- -GAGUCgGGGGAGuUC----GCCGA--------------UGAGGu -5'
28788 5' -58.8 NC_006146.1 + 59178 0.66 0.814116
Target:  5'- gUguGCCaCCUUuguGGUGGCcUGCUCCAu -3'
miRNA:   3'- gAguCGGgGGAGu--UCGCCG-AUGAGGU- -5'
28788 5' -58.8 NC_006146.1 + 130484 0.66 0.814116
Target:  5'- -gCuGCCgCCC-CGGGUGGCUACUUUg -3'
miRNA:   3'- gaGuCGG-GGGaGUUCGCCGAUGAGGu -5'
28788 5' -58.8 NC_006146.1 + 14902 0.66 0.814116
Target:  5'- uCUCGaccguGCCCCCggAGGUGGCggaGCUCUc -3'
miRNA:   3'- -GAGU-----CGGGGGagUUCGCCGa--UGAGGu -5'
28788 5' -58.8 NC_006146.1 + 84390 0.66 0.805473
Target:  5'- -cCAGUugCCCCUCAAGCccaGCUGCcCCu -3'
miRNA:   3'- gaGUCG--GGGGAGUUCGc--CGAUGaGGu -5'
28788 5' -58.8 NC_006146.1 + 130880 0.66 0.805473
Target:  5'- -aCGGCCCCCagCAGGCccccuGCUACgcCCAc -3'
miRNA:   3'- gaGUCGGGGGa-GUUCGc----CGAUGa-GGU- -5'
28788 5' -58.8 NC_006146.1 + 117585 0.66 0.805473
Target:  5'- --gGGCCUCCUCGGGCucggACUCCGg -3'
miRNA:   3'- gagUCGGGGGAGUUCGccgaUGAGGU- -5'
28788 5' -58.8 NC_006146.1 + 731 0.66 0.796679
Target:  5'- cCUCgggAGCCCCCUCAGccccCGGCcgGCgCCGc -3'
miRNA:   3'- -GAG---UCGGGGGAGUUc---GCCGa-UGaGGU- -5'
28788 5' -58.8 NC_006146.1 + 1662 0.66 0.796679
Target:  5'- cCUCgggAGCCCCCUCAGccccCGGCcgGCgCCGc -3'
miRNA:   3'- -GAG---UCGGGGGAGUUc---GCCGa-UGaGGU- -5'
28788 5' -58.8 NC_006146.1 + 2594 0.66 0.796679
Target:  5'- cCUCgggAGCCCCCUCAGccccCGGCcgGCgCCGc -3'
miRNA:   3'- -GAG---UCGGGGGAGUUc---GCCGa-UGaGGU- -5'
28788 5' -58.8 NC_006146.1 + 3526 0.66 0.796679
Target:  5'- cCUCgggAGCCCCCUCAGccccCGGCcgGCgCCGc -3'
miRNA:   3'- -GAG---UCGGGGGAGUUc---GCCGa-UGaGGU- -5'
28788 5' -58.8 NC_006146.1 + 131204 0.66 0.796679
Target:  5'- cCUCuGCCUCCg-GAGCGGC-GCUgCAg -3'
miRNA:   3'- -GAGuCGGGGGagUUCGCCGaUGAgGU- -5'
28788 5' -58.8 NC_006146.1 + 109301 0.66 0.796679
Target:  5'- uCUCGGCCCCggCc-GCGGCcGCUgCAg -3'
miRNA:   3'- -GAGUCGGGGgaGuuCGCCGaUGAgGU- -5'
28788 5' -58.8 NC_006146.1 + 124182 0.66 0.795791
Target:  5'- cCUCcGCCCgCCUCGGagccgccGCGGCcgACUCUu -3'
miRNA:   3'- -GAGuCGGG-GGAGUU-------CGCCGa-UGAGGu -5'
28788 5' -58.8 NC_006146.1 + 40548 0.66 0.78774
Target:  5'- uCUCAGCCCCUcugCAcAGUGaaGCUGCgCCAc -3'
miRNA:   3'- -GAGUCGGGGGa--GU-UCGC--CGAUGaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.