miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28789 5' -58.8 NC_006146.1 + 119656 1.08 0.001742
Target:  5'- cCUCAGCCCCCUCAAGCGGCUACUCCAa -3'
miRNA:   3'- -GAGUCGGGGGAGUUCGCCGAUGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 119626 1.08 0.001742
Target:  5'- cCUCAGCCCCCUCAAGCGGCUACUCCAa -3'
miRNA:   3'- -GAGUCGGGGGAGUUCGCCGAUGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 119536 1.08 0.001742
Target:  5'- cCUCAGCCCCCUCAAGCGGCUACUCCAa -3'
miRNA:   3'- -GAGUCGGGGGAGUUCGCCGAUGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 119596 1.08 0.001742
Target:  5'- cCUCAGCCCCCUCAAGCGGCUACUCCAa -3'
miRNA:   3'- -GAGUCGGGGGAGUUCGCCGAUGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 119566 1.08 0.001742
Target:  5'- cCUCAGCCCCCUCAAGCGGCUACUCCAa -3'
miRNA:   3'- -GAGUCGGGGGAGUUCGCCGAUGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 119506 1.08 0.001742
Target:  5'- cCUCAGCCCCCUCAAGCGGCUACUCCAa -3'
miRNA:   3'- -GAGUCGGGGGAGUUCGCCGAUGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 119686 0.73 0.379686
Target:  5'- cCUCAGCCCCCcCAAGCaaccucccaUGCUCCAc -3'
miRNA:   3'- -GAGUCGGGGGaGUUCGccg------AUGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 85311 0.73 0.404533
Target:  5'- -cCAGCUUCCgaggCGGGCGGCUGcCUCCu -3'
miRNA:   3'- gaGUCGGGGGa---GUUCGCCGAU-GAGGu -5'
28789 5' -58.8 NC_006146.1 + 43473 0.73 0.421658
Target:  5'- -gCAGCCUCCUC-GGCGGCcguugacaccgGCUCCGg -3'
miRNA:   3'- gaGUCGGGGGAGuUCGCCGa----------UGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 119718 0.71 0.484838
Target:  5'- -aCAGCUUCCUCGAGCaGCcuccccgGCUCCAc -3'
miRNA:   3'- gaGUCGGGGGAGUUCGcCGa------UGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 125673 0.71 0.503716
Target:  5'- aCUCAGCCgCUUCAgcugGGCGGCgUGCUUUg -3'
miRNA:   3'- -GAGUCGGgGGAGU----UCGCCG-AUGAGGu -5'
28789 5' -58.8 NC_006146.1 + 53190 0.71 0.522906
Target:  5'- cCUCGGCCCcggCCUUgggGGGCGGCgugccaaACUCCGc -3'
miRNA:   3'- -GAGUCGGG---GGAG---UUCGCCGa------UGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 126922 0.71 0.532607
Target:  5'- aCUCAGCCUCCUCucccgcuGGCaggauGGCgcuCUCCGg -3'
miRNA:   3'- -GAGUCGGGGGAGu------UCG-----CCGau-GAGGU- -5'
28789 5' -58.8 NC_006146.1 + 99903 0.7 0.542372
Target:  5'- cCUCuGCCCCC-CGGGCGcaagaGCggGCUCCGg -3'
miRNA:   3'- -GAGuCGGGGGaGUUCGC-----CGa-UGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 80250 0.7 0.562071
Target:  5'- cCUCuGCCaCCCUCGccGCGGCgcCUCCc -3'
miRNA:   3'- -GAGuCGG-GGGAGUu-CGCCGauGAGGu -5'
28789 5' -58.8 NC_006146.1 + 68013 0.7 0.562071
Target:  5'- -aCGGCCCCUggCGucccccuGCGGCUGCUUCu -3'
miRNA:   3'- gaGUCGGGGGa-GUu------CGCCGAUGAGGu -5'
28789 5' -58.8 NC_006146.1 + 127137 0.7 0.571994
Target:  5'- --uGGUCCCCUCu-GCGGCccACUCCu -3'
miRNA:   3'- gagUCGGGGGAGuuCGCCGa-UGAGGu -5'
28789 5' -58.8 NC_006146.1 + 156342 0.69 0.612035
Target:  5'- gCUCAcGCCCCga-AAGCGGCccagcaGCUCCAg -3'
miRNA:   3'- -GAGU-CGGGGgagUUCGCCGa-----UGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 3453 0.69 0.622099
Target:  5'- -aCGGUCCCgCUCGGGgGGCUaaACUUCGu -3'
miRNA:   3'- gaGUCGGGG-GAGUUCgCCGA--UGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 111135 0.69 0.642241
Target:  5'- cCUCAaCCCCCagguggcCGGGCGGCUGgcCUCCu -3'
miRNA:   3'- -GAGUcGGGGGa------GUUCGCCGAU--GAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.