miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28789 5' -58.8 NC_006146.1 + 731 0.66 0.796679
Target:  5'- cCUCgggAGCCCCCUCAGccccCGGCcgGCgCCGc -3'
miRNA:   3'- -GAG---UCGGGGGAGUUc---GCCGa-UGaGGU- -5'
28789 5' -58.8 NC_006146.1 + 1662 0.66 0.796679
Target:  5'- cCUCgggAGCCCCCUCAGccccCGGCcgGCgCCGc -3'
miRNA:   3'- -GAG---UCGGGGGAGUUc---GCCGa-UGaGGU- -5'
28789 5' -58.8 NC_006146.1 + 2594 0.66 0.796679
Target:  5'- cCUCgggAGCCCCCUCAGccccCGGCcgGCgCCGc -3'
miRNA:   3'- -GAG---UCGGGGGAGUUc---GCCGa-UGaGGU- -5'
28789 5' -58.8 NC_006146.1 + 3453 0.69 0.622099
Target:  5'- -aCGGUCCCgCUCGGGgGGCUaaACUUCGu -3'
miRNA:   3'- gaGUCGGGG-GAGUUCgCCGA--UGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 3526 0.66 0.796679
Target:  5'- cCUCgggAGCCCCCUCAGccccCGGCcgGCgCCGc -3'
miRNA:   3'- -GAG---UCGGGGGAGUUc---GCCGa-UGaGGU- -5'
28789 5' -58.8 NC_006146.1 + 5365 0.68 0.686357
Target:  5'- -gCAGCgCUcgcugucugguucuaCCUCAuGUGGCUGCUCCGa -3'
miRNA:   3'- gaGUCG-GG---------------GGAGUuCGCCGAUGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 12336 0.68 0.662353
Target:  5'- cCUCAGUCCCCUCGccccugGGCcucaGGCc-CUCCGc -3'
miRNA:   3'- -GAGUCGGGGGAGU------UCG----CCGauGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 12475 0.65 0.820071
Target:  5'- cCUCGGgCCCCUCuGGacucCGGCUuccccaucccagccGCUCCc -3'
miRNA:   3'- -GAGUCgGGGGAGuUC----GCCGA--------------UGAGGu -5'
28789 5' -58.8 NC_006146.1 + 14902 0.66 0.814116
Target:  5'- uCUCGaccguGCCCCCggAGGUGGCggaGCUCUc -3'
miRNA:   3'- -GAGU-----CGGGGGagUUCGCCGa--UGAGGu -5'
28789 5' -58.8 NC_006146.1 + 15105 0.68 0.702227
Target:  5'- aCUCgguGGCCCCCagggccacCGAGCGGCU-CUUCu -3'
miRNA:   3'- -GAG---UCGGGGGa-------GUUCGCCGAuGAGGu -5'
28789 5' -58.8 NC_006146.1 + 15415 0.68 0.662353
Target:  5'- cCUCAGUCCCCUCGccccugGGCcucaGGCc-CUCCGc -3'
miRNA:   3'- -GAGUCGGGGGAGU------UCG----CCGauGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 15554 0.65 0.820071
Target:  5'- cCUCGGgCCCCUCuGGacucCGGCUuccccaucccagccGCUCCc -3'
miRNA:   3'- -GAGUCgGGGGAGuUC----GCCGA--------------UGAGGu -5'
28789 5' -58.8 NC_006146.1 + 18493 0.68 0.662353
Target:  5'- cCUCAGUCCCCUCGccccugGGCcucaGGCc-CUCCGc -3'
miRNA:   3'- -GAGUCGGGGGAGU------UCG----CCGauGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 18632 0.65 0.820071
Target:  5'- cCUCGGgCCCCUCuGGacucCGGCUuccccaucccagccGCUCCc -3'
miRNA:   3'- -GAGUCgGGGGAGuUC----GCCGA--------------UGAGGu -5'
28789 5' -58.8 NC_006146.1 + 20961 0.67 0.769464
Target:  5'- cCUgGGCgCCCCUCAaccccgagGGCaGGCUACgagUCAu -3'
miRNA:   3'- -GAgUCG-GGGGAGU--------UCG-CCGAUGa--GGU- -5'
28789 5' -58.8 NC_006146.1 + 21571 0.68 0.662353
Target:  5'- cCUCAGUCCCCUCGccccugGGCcucaGGCc-CUCCGc -3'
miRNA:   3'- -GAGUCGGGGGAGU------UCG----CCGauGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 21710 0.65 0.820071
Target:  5'- cCUCGGgCCCCUCuGGacucCGGCUuccccaucccagccGCUCCc -3'
miRNA:   3'- -GAGUCgGGGGAGuUC----GCCGA--------------UGAGGu -5'
28789 5' -58.8 NC_006146.1 + 24649 0.68 0.662353
Target:  5'- cCUCAGUCCCCUCGccccugGGCcucaGGCc-CUCCGc -3'
miRNA:   3'- -GAGUCGGGGGAGU------UCG----CCGauGAGGU- -5'
28789 5' -58.8 NC_006146.1 + 24788 0.65 0.820071
Target:  5'- cCUCGGgCCCCUCuGGacucCGGCUuccccaucccagccGCUCCc -3'
miRNA:   3'- -GAGUCgGGGGAGuUC----GCCGA--------------UGAGGu -5'
28789 5' -58.8 NC_006146.1 + 27727 0.68 0.662353
Target:  5'- cCUCAGUCCCCUCGccccugGGCcucaGGCc-CUCCGc -3'
miRNA:   3'- -GAGUCGGGGGAGU------UCG----CCGauGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.