miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2879 3' -57.7 NC_001493.1 + 88129 0.66 0.837342
Target:  5'- cUCCgaGUCUCGAuCGAuCGC-UCCagGCGCc -3'
miRNA:   3'- -AGGa-CAGGGCU-GCU-GCGuAGGa-CGCG- -5'
2879 3' -57.7 NC_001493.1 + 81815 0.66 0.836529
Target:  5'- aCCgcuaCUCGACGAUGCcgCCUuuaacgaGCGCa -3'
miRNA:   3'- aGGaca-GGGCUGCUGCGuaGGA-------CGCG- -5'
2879 3' -57.7 NC_001493.1 + 95410 0.66 0.828299
Target:  5'- uUCCUGcccaCCCGugaccGCGACGCGaauauuucucgggUCCaugGCGCc -3'
miRNA:   3'- -AGGACa---GGGC-----UGCUGCGU-------------AGGa--CGCG- -5'
2879 3' -57.7 NC_001493.1 + 40045 0.66 0.81219
Target:  5'- gCUUGgaacucggaaCCCGA--GCGgGUCCUGCGCa -3'
miRNA:   3'- aGGACa---------GGGCUgcUGCgUAGGACGCG- -5'
2879 3' -57.7 NC_001493.1 + 45866 0.67 0.794612
Target:  5'- gCCUcUCCuCGGCGAgaugUGCGggCUGCGCg -3'
miRNA:   3'- aGGAcAGG-GCUGCU----GCGUagGACGCG- -5'
2879 3' -57.7 NC_001493.1 + 79341 0.67 0.784695
Target:  5'- aCCgagCgCGACGAaaacgaucaucagUGUGUCCUGCGCg -3'
miRNA:   3'- aGGacaGgGCUGCU-------------GCGUAGGACGCG- -5'
2879 3' -57.7 NC_001493.1 + 58881 0.68 0.719265
Target:  5'- gCCgGUCgCGAUGGCaCAUCCcUGCGUc -3'
miRNA:   3'- aGGaCAGgGCUGCUGcGUAGG-ACGCG- -5'
2879 3' -57.7 NC_001493.1 + 40236 0.68 0.699522
Target:  5'- uUUCUGUCCUGAgcuCGCGaaUCgUGCGCa -3'
miRNA:   3'- -AGGACAGGGCUgcuGCGU--AGgACGCG- -5'
2879 3' -57.7 NC_001493.1 + 79122 0.69 0.689563
Target:  5'- uUCCagGUCCUGgaccaGCGuguuCGCGUCC-GCGCa -3'
miRNA:   3'- -AGGa-CAGGGC-----UGCu---GCGUAGGaCGCG- -5'
2879 3' -57.7 NC_001493.1 + 25454 0.71 0.568744
Target:  5'- cUCCUGUCCCGAaaaaGACGgGcgCCUGaGUu -3'
miRNA:   3'- -AGGACAGGGCUg---CUGCgUa-GGACgCG- -5'
2879 3' -57.7 NC_001493.1 + 39926 0.72 0.499381
Target:  5'- aCCUGUCCaGACG-CGCAUauguacacuggaaCCUGCGg -3'
miRNA:   3'- aGGACAGGgCUGCuGCGUA-------------GGACGCg -5'
2879 3' -57.7 NC_001493.1 + 48515 0.73 0.426979
Target:  5'- uUUCUGUCCgcCGGCGuCGCGUCCaccgUGCGUu -3'
miRNA:   3'- -AGGACAGG--GCUGCuGCGUAGG----ACGCG- -5'
2879 3' -57.7 NC_001493.1 + 92191 0.74 0.409651
Target:  5'- uUCCUGcUCCUGACGACGgAUCCcGgGg -3'
miRNA:   3'- -AGGAC-AGGGCUGCUGCgUAGGaCgCg -5'
2879 3' -57.7 NC_001493.1 + 124954 1.12 0.001146
Target:  5'- gUCCUGUCCCGACGACGCAUCCUGCGCa -3'
miRNA:   3'- -AGGACAGGGCUGCUGCGUAGGACGCG- -5'
2879 3' -57.7 NC_001493.1 + 9400 1.12 0.001146
Target:  5'- gUCCUGUCCCGACGACGCAUCCUGCGCa -3'
miRNA:   3'- -AGGACAGGGCUGCUGCGUAGGACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.