Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2879 | 5' | -55 | NC_001493.1 | + | 74610 | 0.68 | 0.804604 |
Target: 5'- cAGCgaUUCAGGgagGCGgGGGuGACGGGACu -3' miRNA: 3'- aUCG--AGGUCCa--UGUgCUU-CUGCCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 44468 | 0.68 | 0.79543 |
Target: 5'- cGGUUCCGGGgccugcucggGC-CGGAGAUGGuGGCa -3' miRNA: 3'- aUCGAGGUCCa---------UGuGCUUCUGCC-CUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 125113 | 0.68 | 0.79543 |
Target: 5'- gGGCUCaCGgccuaccacgcGGUGCuCGccGACGGGACg -3' miRNA: 3'- aUCGAG-GU-----------CCAUGuGCuuCUGCCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 9559 | 0.68 | 0.79543 |
Target: 5'- gGGCUCaCGgccuaccacgcGGUGCuCGccGACGGGACg -3' miRNA: 3'- aUCGAG-GU-----------CCAUGuGCuuCUGCCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 81077 | 0.69 | 0.786102 |
Target: 5'- -uGCUCCcacAGGUccACGCuccgGggGACGGGAg -3' miRNA: 3'- auCGAGG---UCCA--UGUG----CuuCUGCCCUg -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 79395 | 0.69 | 0.776628 |
Target: 5'- cAGCUgagCCuGGUcCACGAAGGgCGGGAg -3' miRNA: 3'- aUCGA---GGuCCAuGUGCUUCU-GCCCUg -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 19367 | 0.71 | 0.644702 |
Target: 5'- gGGCUCgAGGUAC-CGAucaAG-UGGGACa -3' miRNA: 3'- aUCGAGgUCCAUGuGCU---UCuGCCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 37934 | 0.71 | 0.634219 |
Target: 5'- gGGCUUCAGG---GCGggGAuCGGGAUg -3' miRNA: 3'- aUCGAGGUCCaugUGCuuCU-GCCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 64353 | 0.72 | 0.623734 |
Target: 5'- aAGCccagugauuuUCCAGGUgACGCGguGAcCGGGACg -3' miRNA: 3'- aUCG----------AGGUCCA-UGUGCuuCU-GCCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 72356 | 0.72 | 0.623734 |
Target: 5'- gAGCUCCuucaucauaaAGGUGucCAUGAAGcGCGGGGCc -3' miRNA: 3'- aUCGAGG----------UCCAU--GUGCUUC-UGCCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 105864 | 0.75 | 0.406737 |
Target: 5'- gUGGCcacgaCCGGGUACACGGAGACGaGGuCc -3' miRNA: 3'- -AUCGa----GGUCCAUGUGCUUCUGC-CCuG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 71008 | 0.8 | 0.225887 |
Target: 5'- gGGUUCCAGGUGCACaGGGauuuuGCGGGACu -3' miRNA: 3'- aUCGAGGUCCAUGUGcUUC-----UGCCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 124911 | 1.09 | 0.002912 |
Target: 5'- gUAGCUCCAGGUACACGAAGACGGGACg -3' miRNA: 3'- -AUCGAGGUCCAUGUGCUUCUGCCCUG- -5' |
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2879 | 5' | -55 | NC_001493.1 | + | 9357 | 1.09 | 0.002912 |
Target: 5'- gUAGCUCCAGGUACACGAAGACGGGACg -3' miRNA: 3'- -AUCGAGGUCCAUGUGCUUCUGCCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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