miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28790 3' -53.5 NC_006146.1 + 118518 1.11 0.004465
Target:  5'- uCAUCGAGACGGACGGCUCCUUCUACCu -3'
miRNA:   3'- -GUAGCUCUGCCUGCCGAGGAAGAUGG- -5'
28790 3' -53.5 NC_006146.1 + 85318 0.87 0.160464
Target:  5'- --cCGAGGCGGGCGGCUgCCUcCUGCCa -3'
miRNA:   3'- guaGCUCUGCCUGCCGA-GGAaGAUGG- -5'
28790 3' -53.5 NC_006146.1 + 126011 0.79 0.420811
Target:  5'- aGUgGGGGCGGugGGCUUCUgCUGCUg -3'
miRNA:   3'- gUAgCUCUGCCugCCGAGGAaGAUGG- -5'
28790 3' -53.5 NC_006146.1 + 125092 0.76 0.583404
Target:  5'- -uUCGAGGCGGccgugGCGGCggCCUUCcucgGCCg -3'
miRNA:   3'- guAGCUCUGCC-----UGCCGa-GGAAGa---UGG- -5'
28790 3' -53.5 NC_006146.1 + 16887 0.73 0.763901
Target:  5'- --aCGAG-CGGGcCGGCUCCUUCcACg -3'
miRNA:   3'- guaGCUCuGCCU-GCCGAGGAAGaUGg -5'
28790 3' -53.5 NC_006146.1 + 68824 0.72 0.808702
Target:  5'- gCAUCGAGAUGGACgagagcgGGCUCaaggccCUGCUg -3'
miRNA:   3'- -GUAGCUCUGCCUG-------CCGAGgaa---GAUGG- -5'
28790 3' -53.5 NC_006146.1 + 35263 0.71 0.851262
Target:  5'- aGUCaGAGcACGGcCGGCUCCUUauuaACCu -3'
miRNA:   3'- gUAG-CUC-UGCCuGCCGAGGAAga--UGG- -5'
28790 3' -53.5 NC_006146.1 + 122797 0.7 0.888018
Target:  5'- ---aGAGACGGGCGGCcgaggCCgcgcugUCgGCCg -3'
miRNA:   3'- guagCUCUGCCUGCCGa----GGa-----AGaUGG- -5'
28790 3' -53.5 NC_006146.1 + 120371 0.7 0.894713
Target:  5'- --cCGGGACcuGGAgCGGCUCCUg--ACCu -3'
miRNA:   3'- guaGCUCUG--CCU-GCCGAGGAagaUGG- -5'
28790 3' -53.5 NC_006146.1 + 67787 0.69 0.907416
Target:  5'- ---aGGGACGuGACGGCggCCaggcUCUGCCc -3'
miRNA:   3'- guagCUCUGC-CUGCCGa-GGa---AGAUGG- -5'
28790 3' -53.5 NC_006146.1 + 18004 0.69 0.924708
Target:  5'- cCAUCGAGcUGGACGGCaucgCCaccCUGCa -3'
miRNA:   3'- -GUAGCUCuGCCUGCCGa---GGaa-GAUGg -5'
28790 3' -53.5 NC_006146.1 + 57163 0.69 0.924708
Target:  5'- --aCGGGACGGGCcGCUaCCUUCcACg -3'
miRNA:   3'- guaGCUCUGCCUGcCGA-GGAAGaUGg -5'
28790 3' -53.5 NC_006146.1 + 46730 0.68 0.929997
Target:  5'- --cCGAGGCGGGCGGaggCCacgCUgGCCa -3'
miRNA:   3'- guaGCUCUGCCUGCCga-GGaa-GA-UGG- -5'
28790 3' -53.5 NC_006146.1 + 10206 0.68 0.944438
Target:  5'- --aCGAGACGGACcug-CC-UCUACCg -3'
miRNA:   3'- guaGCUCUGCCUGccgaGGaAGAUGG- -5'
28790 3' -53.5 NC_006146.1 + 47759 0.68 0.944438
Target:  5'- -cUgGGGACGGagaGCGGCcUCUUCUcGCCg -3'
miRNA:   3'- guAgCUCUGCC---UGCCGaGGAAGA-UGG- -5'
28790 3' -53.5 NC_006146.1 + 120988 0.68 0.948781
Target:  5'- --cCGAGugGccucGGCGGcCUCCgaCUACCu -3'
miRNA:   3'- guaGCUCugC----CUGCC-GAGGaaGAUGG- -5'
28790 3' -53.5 NC_006146.1 + 39675 0.68 0.948781
Target:  5'- -uUgGAGGCGG-CgGGCUCCUgg-GCCu -3'
miRNA:   3'- guAgCUCUGCCuG-CCGAGGAagaUGG- -5'
28790 3' -53.5 NC_006146.1 + 130015 0.68 0.948781
Target:  5'- gAUCGcAGACGaGGCcccGGCUCCgUCU-CCg -3'
miRNA:   3'- gUAGC-UCUGC-CUG---CCGAGGaAGAuGG- -5'
28790 3' -53.5 NC_006146.1 + 96826 0.68 0.951683
Target:  5'- gGUgGGGACGGGCGggcagguugggcccGCUUCagccUCUGCCg -3'
miRNA:   3'- gUAgCUCUGCCUGC--------------CGAGGa---AGAUGG- -5'
28790 3' -53.5 NC_006146.1 + 50230 0.68 0.952892
Target:  5'- cCcgCGAGAUGGugGCGGUggcugCCUUgaACCa -3'
miRNA:   3'- -GuaGCUCUGCC--UGCCGa----GGAAgaUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.