miRNA display CGI


Results 1 - 20 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28790 5' -60.9 NC_006146.1 + 34862 0.66 0.740276
Target:  5'- -cGCCGGAgcGGGGCaGCgGaCCCagGGGCAc -3'
miRNA:   3'- gaCGGUUU--UCCUG-CGgC-GGGg-CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 75583 0.66 0.740276
Target:  5'- cCUGUaauGAGGcCGCCGUCCCgaucaaggggGGGUAa -3'
miRNA:   3'- -GACGguuUUCCuGCGGCGGGG----------CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 34025 0.66 0.740276
Target:  5'- -cGCCGGAgcGGGGCaGCgGaCCCagGGGCAc -3'
miRNA:   3'- gaCGGUUU--UCCUG-CGgC-GGGg-CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 34118 0.66 0.740276
Target:  5'- -cGCCGGAgcGGGGCaGCgGaCCCagGGGCAc -3'
miRNA:   3'- gaCGGUUU--UCCUG-CGgC-GGGg-CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 34211 0.66 0.740276
Target:  5'- -cGCCGGAgcGGGGCaGCgGaCCCagGGGCAc -3'
miRNA:   3'- gaCGGUUU--UCCUG-CGgC-GGGg-CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 34304 0.66 0.740276
Target:  5'- -cGCCGGAgcGGGGCaGCgGaCCCagGGGCAc -3'
miRNA:   3'- gaCGGUUU--UCCUG-CGgC-GGGg-CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 34397 0.66 0.740276
Target:  5'- -cGCCGGAgcGGGGCaGCgGaCCCagGGGCAc -3'
miRNA:   3'- gaCGGUUU--UCCUG-CGgC-GGGg-CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 34490 0.66 0.740276
Target:  5'- -cGCCGGAgcGGGGCaGCgGaCCCagGGGCAc -3'
miRNA:   3'- gaCGGUUU--UCCUG-CGgC-GGGg-CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 34583 0.66 0.740276
Target:  5'- -cGCCGGAgcGGGGCaGCgGaCCCagGGGCAc -3'
miRNA:   3'- gaCGGUUU--UCCUG-CGgC-GGGg-CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 34676 0.66 0.740276
Target:  5'- -cGCCGGAgcGGGGCaGCgGaCCCagGGGCAc -3'
miRNA:   3'- gaCGGUUU--UCCUG-CGgC-GGGg-CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 34769 0.66 0.740276
Target:  5'- -cGCCGGAgcGGGGCaGCgGaCCCagGGGCAc -3'
miRNA:   3'- gaCGGUUU--UCCUG-CGgC-GGGg-CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 103266 0.66 0.740276
Target:  5'- aUGCCuacAGGGGGCGCCuuccacugGCCUCGGcCGa -3'
miRNA:   3'- gACGGu--UUUCCUGCGG--------CGGGGCCcGU- -5'
28790 5' -60.9 NC_006146.1 + 34954 0.66 0.740276
Target:  5'- -cGCCGGAgcGGGGCaGCgGaCCCagGGGCAc -3'
miRNA:   3'- gaCGGUUU--UCCUG-CGgC-GGGg-CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 35047 0.66 0.740276
Target:  5'- -cGCCGGAgcGGGGCaGCgGaCCCagGGGCAc -3'
miRNA:   3'- gaCGGUUU--UCCUG-CGgC-GGGg-CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 35140 0.66 0.740276
Target:  5'- -cGCCGGAgcGGGGCaGCgGaCCCagGGGCAc -3'
miRNA:   3'- gaCGGUUU--UCCUG-CGgC-GGGg-CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 35233 0.66 0.740276
Target:  5'- -cGCCGGAgcGGGGCaGCgGaCCCagGGGCAc -3'
miRNA:   3'- gaCGGUUU--UCCUG-CGgC-GGGg-CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 35326 0.66 0.740276
Target:  5'- -cGCCGGAgcGGGGCaGCgGaCCCagGGGCAc -3'
miRNA:   3'- gaCGGUUU--UCCUG-CGgC-GGGg-CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 35419 0.66 0.740276
Target:  5'- -cGCCGGAgcGGGGCaGCgGaCCCagGGGCAc -3'
miRNA:   3'- gaCGGUUU--UCCUG-CGgC-GGGg-CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 35512 0.66 0.740276
Target:  5'- -cGCCGGAgcGGGGCaGCgGaCCCagGGGCAc -3'
miRNA:   3'- gaCGGUUU--UCCUG-CGgC-GGGg-CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 35605 0.66 0.740276
Target:  5'- -cGCCGGAgcGGGGCaGCgGaCCCagGGGCAc -3'
miRNA:   3'- gaCGGUUU--UCCUG-CGgC-GGGg-CCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.