miRNA display CGI


Results 1 - 20 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28790 5' -60.9 NC_006146.1 + 118557 1.08 0.001314
Target:  5'- aCUGCCAAAAGGACGCCGCCCCGGGCAc -3'
miRNA:   3'- -GACGGUUUUCCUGCGGCGGGGCCCGU- -5'
28790 5' -60.9 NC_006146.1 + 12775 0.79 0.145381
Target:  5'- cCUGCCGGAccuGGACGCgGCCCUgcagGGGCGg -3'
miRNA:   3'- -GACGGUUUu--CCUGCGgCGGGG----CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 52630 0.78 0.168549
Target:  5'- gUGCCcccuGAGGAUGCCGCUCUGGcGCAu -3'
miRNA:   3'- gACGGuu--UUCCUGCGGCGGGGCC-CGU- -5'
28790 5' -60.9 NC_006146.1 + 130471 0.77 0.181333
Target:  5'- -cGCCuacGGGGCcgcuGCCGCCCCGGGUg -3'
miRNA:   3'- gaCGGuuuUCCUG----CGGCGGGGCCCGu -5'
28790 5' -60.9 NC_006146.1 + 124928 0.77 0.194969
Target:  5'- -cGCgGGgcGAGGA-GCUGCCCCGGGCAg -3'
miRNA:   3'- gaCGgUU--UUCCUgCGGCGGGGCCCGU- -5'
28790 5' -60.9 NC_006146.1 + 25670 0.76 0.204551
Target:  5'- aUGUCAGAGGGGaGCCGCCCUcgGGGCc -3'
miRNA:   3'- gACGGUUUUCCUgCGGCGGGG--CCCGu -5'
28790 5' -60.9 NC_006146.1 + 13358 0.76 0.204551
Target:  5'- aUGUCAGAGGGGaGCCGCCCUcgGGGCc -3'
miRNA:   3'- gACGGUUUUCCUgCGGCGGGG--CCCGu -5'
28790 5' -60.9 NC_006146.1 + 16436 0.76 0.204551
Target:  5'- aUGUCAGAGGGGaGCCGCCCUcgGGGCc -3'
miRNA:   3'- gACGGUUUUCCUgCGGCGGGG--CCCGu -5'
28790 5' -60.9 NC_006146.1 + 28748 0.76 0.204551
Target:  5'- aUGUCAGAGGGGaGCCGCCCUcgGGGCc -3'
miRNA:   3'- gACGGUUUUCCUgCGGCGGGG--CCCGu -5'
28790 5' -60.9 NC_006146.1 + 22592 0.76 0.204551
Target:  5'- aUGUCAGAGGGGaGCCGCCCUcgGGGCc -3'
miRNA:   3'- gACGGUUUUCCUgCGGCGGGG--CCCGu -5'
28790 5' -60.9 NC_006146.1 + 19514 0.76 0.204551
Target:  5'- aUGUCAGAGGGGaGCCGCCCUcgGGGCc -3'
miRNA:   3'- gACGGUUUUCCUgCGGCGGGG--CCCGu -5'
28790 5' -60.9 NC_006146.1 + 128194 0.76 0.224941
Target:  5'- -gGcCCAGGGGGGCGCCGCggcgCCGGGCc -3'
miRNA:   3'- gaC-GGUUUUCCUGCGGCGg---GGCCCGu -5'
28790 5' -60.9 NC_006146.1 + 53601 0.76 0.230301
Target:  5'- aUGCCGgggAAAGGGCGCgGCaCCGGGCc -3'
miRNA:   3'- gACGGU---UUUCCUGCGgCGgGGCCCGu -5'
28790 5' -60.9 NC_006146.1 + 117554 0.75 0.252825
Target:  5'- -aGCCAAGAccucACGCCGCCCCGcGGCc -3'
miRNA:   3'- gaCGGUUUUcc--UGCGGCGGGGC-CCGu -5'
28790 5' -60.9 NC_006146.1 + 54981 0.75 0.264752
Target:  5'- gCUGCCcccguacccGGGGugGCCGgaagccCCCCGGGCGg -3'
miRNA:   3'- -GACGGuu-------UUCCugCGGC------GGGGCCCGU- -5'
28790 5' -60.9 NC_006146.1 + 66454 0.74 0.274619
Target:  5'- gCUGCCugccGAGGGCGCCGCCCCuguccaccuuguaGGUAu -3'
miRNA:   3'- -GACGGuu--UUCCUGCGGCGGGGc------------CCGU- -5'
28790 5' -60.9 NC_006146.1 + 127555 0.74 0.277131
Target:  5'- cCUGCCAc-GGGcuGCGCCugcugGCCCUGGGCGg -3'
miRNA:   3'- -GACGGUuuUCC--UGCGG-----CGGGGCCCGU- -5'
28790 5' -60.9 NC_006146.1 + 30205 0.74 0.283492
Target:  5'- -aGCCAGAGGGcCGCUGCgCCCgccGGGCu -3'
miRNA:   3'- gaCGGUUUUCCuGCGGCG-GGG---CCCGu -5'
28790 5' -60.9 NC_006146.1 + 15024 0.74 0.296559
Target:  5'- uUGCCAggGAGGGGCGCCuggccaggGCCCgcCGGGCc -3'
miRNA:   3'- gACGGU--UUUCCUGCGG--------CGGG--GCCCGu -5'
28790 5' -60.9 NC_006146.1 + 68144 0.73 0.316329
Target:  5'- -cGCCAcgcaggaAAGGGGCuGCCuccuCCCCGGGCAg -3'
miRNA:   3'- gaCGGU-------UUUCCUG-CGGc---GGGGCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.