miRNA display CGI


Results 1 - 20 of 282 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28790 5' -60.9 NC_006146.1 + 835 0.7 0.470231
Target:  5'- -gGCCAuccccacGCGCgGCCCCGGGCc -3'
miRNA:   3'- gaCGGUuuucc--UGCGgCGGGGCCCGu -5'
28790 5' -60.9 NC_006146.1 + 882 0.7 0.492183
Target:  5'- -gGCCGcgggagcagacggggGAAGGccgcGCGCCGCCCCccgggaccccGGGCGc -3'
miRNA:   3'- gaCGGU---------------UUUCC----UGCGGCGGGG----------CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 1143 0.7 0.461232
Target:  5'- gUGCCcccgcGAGGGuccccGgGCCGCCCCGGGg- -3'
miRNA:   3'- gACGGu----UUUCC-----UgCGGCGGGGCCCgu -5'
28790 5' -60.9 NC_006146.1 + 1767 0.7 0.470231
Target:  5'- -gGCCAuccccacGCGCgGCCCCGGGCc -3'
miRNA:   3'- gaCGGUuuucc--UGCGgCGGGGCCCGu -5'
28790 5' -60.9 NC_006146.1 + 1814 0.7 0.492183
Target:  5'- -gGCCGcgggagcagacggggGAAGGccgcGCGCCGCCCCccgggaccccGGGCGc -3'
miRNA:   3'- gaCGGU---------------UUUCC----UGCGGCGGGG----------CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 2075 0.7 0.461232
Target:  5'- gUGCCcccgcGAGGGuccccGgGCCGCCCCGGGg- -3'
miRNA:   3'- gACGGu----UUUCC-----UgCGGCGGGGCCCgu -5'
28790 5' -60.9 NC_006146.1 + 2699 0.7 0.470231
Target:  5'- -gGCCAuccccacGCGCgGCCCCGGGCc -3'
miRNA:   3'- gaCGGUuuucc--UGCGgCGGGGCCCGu -5'
28790 5' -60.9 NC_006146.1 + 2746 0.7 0.492183
Target:  5'- -gGCCGcgggagcagacggggGAAGGccgcGCGCCGCCCCccgggaccccGGGCGc -3'
miRNA:   3'- gaCGGU---------------UUUCC----UGCGGCGGGG----------CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 3007 0.7 0.461232
Target:  5'- gUGCCcccgcGAGGGuccccGgGCCGCCCCGGGg- -3'
miRNA:   3'- gACGGu----UUUCC-----UgCGGCGGGGCCCgu -5'
28790 5' -60.9 NC_006146.1 + 3059 0.66 0.730825
Target:  5'- -cGCCGAGAGcGCGuuGgCCCaGGCu -3'
miRNA:   3'- gaCGGUUUUCcUGCggCgGGGcCCGu -5'
28790 5' -60.9 NC_006146.1 + 3631 0.7 0.470231
Target:  5'- -gGCCAuccccacGCGCgGCCCCGGGCc -3'
miRNA:   3'- gaCGGUuuucc--UGCGgCGGGGCCCGu -5'
28790 5' -60.9 NC_006146.1 + 3678 0.7 0.492183
Target:  5'- -gGCCGcgggagcagacggggGAAGGccgcGCGCCGCCCCccgggaccccGGGCGc -3'
miRNA:   3'- gaCGGU---------------UUUCC----UGCGGCGGGG----------CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 4917 0.7 0.488491
Target:  5'- -aGCCGGAcccucgcugucGGGugGCCgugcucuguGCCCCGGGg- -3'
miRNA:   3'- gaCGGUUU-----------UCCugCGG---------CGGGGCCCgu -5'
28790 5' -60.9 NC_006146.1 + 5094 0.66 0.686453
Target:  5'- -gGCCA--GGGACGCCccccuagccggccguGCCaCCGuGGCu -3'
miRNA:   3'- gaCGGUuuUCCUGCGG---------------CGG-GGC-CCGu -5'
28790 5' -60.9 NC_006146.1 + 6189 0.67 0.661914
Target:  5'- -gGCCcuggauuAGAGGAuaggacuCGuUCGCCCCGGGUAg -3'
miRNA:   3'- gaCGGu------UUUCCU-------GC-GGCGGGGCCCGU- -5'
28790 5' -60.9 NC_006146.1 + 10785 0.69 0.535497
Target:  5'- -gGCCAccuacccccuGAGGGAgGUCGCCacgCUGGGCAc -3'
miRNA:   3'- gaCGGU----------UUUCCUgCGGCGG---GGCCCGU- -5'
28790 5' -60.9 NC_006146.1 + 12775 0.79 0.145381
Target:  5'- cCUGCCGGAccuGGACGCgGCCCUgcagGGGCGg -3'
miRNA:   3'- -GACGGUUUu--CCUGCGgCGGGG----CCCGU- -5'
28790 5' -60.9 NC_006146.1 + 12841 0.66 0.682541
Target:  5'- -gGCCGGAcccgAGGAgG-CGCCUgGGGCGa -3'
miRNA:   3'- gaCGGUUU----UCCUgCgGCGGGgCCCGU- -5'
28790 5' -60.9 NC_006146.1 + 13188 0.66 0.712656
Target:  5'- cCUGCCcggccucgcuccGGGCGCCuCCUCGGGUu -3'
miRNA:   3'- -GACGGuuuu--------CCUGCGGcGGGGCCCGu -5'
28790 5' -60.9 NC_006146.1 + 13358 0.76 0.204551
Target:  5'- aUGUCAGAGGGGaGCCGCCCUcgGGGCc -3'
miRNA:   3'- gACGGUUUUCCUgCGGCGGGG--CCCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.